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    29 repositories

    • language-war

      Public
      C
      •
      MIT License
      •0•0•0•0•Updated May 9, 2026May 9, 2026

    • snakehive

      Public
      Tutorial and best practices for snakemake and hive
      Python
      •
      MIT License
      •0•0•0•0•Updated May 9, 2026May 9, 2026

    • isoforms

      Public
      Jupyter Notebook
      •
      MIT License
      •1•1•0•0•Updated May 8, 2026May 8, 2026

    • init

      Public
      How to get started in the Korf Lab
      Python
      •
      MIT License
      •5•6•0•3•Updated May 1, 2026May 1, 2026

    • genomes

      Public
      Information and scripts for accessing genome sequence and annotation from various providers
      Python
      •0•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • ibnu2026

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • gqc

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Feb 12, 2026Feb 12, 2026

    • gff-sql

      Public
      Exercise in modeling GFF in SQL
      Python
      •
      MIT License
      •0•0•0•0•Updated Jan 4, 2026Jan 4, 2026

    • adnauseum

      Public
      Perl
      •
      MIT License
      •0•0•0•0•Updated Dec 5, 2025Dec 5, 2025

    • intronomicon

      Public
      The Book of Introns
      Perl
      •0•2•0•0•Updated Jul 10, 2025Jul 10, 2025

    • CARE

      Public
      Computational Allocation of Resource Estimate
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 27, 2025Jun 27, 2025

    • smallgenes

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Jun 21, 2025Jun 21, 2025

    • kgf

      Public
      kompressed genomic features
      Python
      •
      The Unlicense
      •0•0•0•0•Updated May 23, 2025May 23, 2025

    • datacore2024

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Apr 23, 2025Apr 23, 2025

    • SABR

      Public
      Python
      •
      MIT License
      •0•0•0•0•Updated Mar 30, 2025Mar 30, 2025

    • grimoire

      Public
      Biological sequence analysis tools
      Python
      •
      MIT License
      •0•3•11•0•Updated Nov 14, 2024Nov 14, 2024

    • korflab.github.io

      Public
      0•1•0•0•Updated Mar 11, 2024Mar 11, 2024

    • SNAP

      Public
      Gene prediction software
      C
      •
      Other
      •17•70•14•2•Updated Oct 22, 2022Oct 22, 2022

    • genDL

      Public
      Genomic experiments in Deep Learning
      Jupyter Notebook
      •0•1•5•0•Updated Jun 3, 2022Jun 3, 2022

    • StochHMM

      Public
      A Hidden Markov Model Application and C++ Library for Rapid and Flexible Development of HMMs
      C++
      •
      Other
      •47•161•5•5•Updated Sep 9, 2021Sep 9, 2021

    • unix_and_perl

      Public
      HTML
      •2•7•0•0•Updated Jan 15, 2021Jan 15, 2021

    • specDB

      Public
      Database of protein NMR spectra
      0•0•0•0•Updated May 20, 2019May 20, 2019

    • IME

      Public
      A new code base for the IME project.
      Perl
      •3•1•2•1•Updated Nov 16, 2017Nov 16, 2017

    • Rosalind

      Public
      Solutions to Rosalind problems
      Perl
      •3•3•0•0•Updated Apr 4, 2017Apr 4, 2017

    • CEGMA_v2

      Public
      The final version 2 release of our software to detect core genes in eukaryotic genomes
      Perl
      •10•30•5•2•Updated Mar 31, 2015Mar 31, 2015

    • Mermade

      Public
      Bind-n-Seq processing
      Perl
      •0•0•0•0•Updated Nov 3, 2014Nov 3, 2014

    • Perl_utils

      Public
      Miscellaneous Perl scripts and modules used by people in the Korf lab
      Perl
      •
      GNU General Public License v2.0
      •2•4•0•0•Updated May 22, 2014May 22, 2014

    • Centromere_repeat_paper

      Public
      Code used to generate data for our analysis of centromeric repeats
      Perl
      •
      GNU General Public License v2.0
      •4•3•0•0•Updated May 22, 2014May 22, 2014

    • Assemblathon

      Public
      Code that was used in the Assemblathon 1 and 2 projects
      Perl
      •7•6•0•0•Updated May 22, 2014May 22, 2014
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