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    • libGPML

      Public
      Java library for reading / writing GPML files
      Java
      Apache License 2.0
      5451Updated Dec 28, 2025Dec 28, 2025
    • 1001Updated Aug 6, 2025Aug 6, 2025
    • pathvisio

      Public
      PathVisio - pathway editor, visualization and analysis software
      Java
      Apache License 2.0
      22281031Updated Jan 22, 2025Jan 22, 2025
    • Plugin repository for PathVisio
      HTML
      Apache License 2.0
      0000Updated Jan 22, 2025Jan 22, 2025
    • PathVisio website and tutorials (under development)
      HTML
      MIT License
      40112Updated Sep 3, 2024Sep 3, 2024
    • :book: PathVisio
      HTML
      Creative Commons Zero v1.0 Universal
      3300Updated Jan 15, 2024Jan 15, 2024
    • Java
      Apache License 2.0
      40192Updated Jan 27, 2023Jan 27, 2023
    • libGPML Java documentation
      HTML
      0000Updated Aug 27, 2022Aug 27, 2022
    • PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway sta…
      Java
      5861Updated Apr 1, 2022Apr 1, 2022
    • GPML Homology Mapper
      Java
      Apache License 2.0
      2010Updated Mar 29, 2022Mar 29, 2022
    • Java
      Apache License 2.0
      0000Updated Dec 2, 2021Dec 2, 2021
    • BH2021

      Public
      MIT License
      0000Updated Nov 11, 2021Nov 11, 2021
    • GPML

      Public
      Graphical Pathway Markup Language
      Python
      35110Updated Oct 21, 2021Oct 21, 2021
    • 0000Updated Sep 28, 2021Sep 28, 2021
    • WP-plugin

      Public
      Plugin for PathVisio that provides a WikiPathways client.
      Java
      Apache License 2.0
      52103Updated Mar 31, 2020Mar 31, 2020
    • GO-plugin

      Public
      Java
      Apache License 2.0
      0000Updated May 1, 2019May 1, 2019
    • R package for PathVisioRPC
      R
      4220Updated Apr 1, 2019Apr 1, 2019
    • tutorials

      Public
      Tutorials and workshop material for PathVisio
      3000Updated Oct 8, 2018Oct 8, 2018
    • Enables the conversion of pathway elements into other types (e.g. Label into Metabolite)
      Java
      Apache License 2.0
      1151Updated Apr 25, 2018Apr 25, 2018
    • PathVisio plugin to find relevant metabolic reactions from Rhea
      Java
      Apache License 2.0
      1110Updated Apr 25, 2018Apr 25, 2018
    • GSEA plugin for PathVisio
      Java
      1010Updated Dec 18, 2017Dec 18, 2017
    • library to read/write GPML
      Java
      Apache License 2.0
      4050Updated Aug 24, 2017Aug 24, 2017
    • PathwayLoom plugin for PathVisio
      Java
      Apache License 2.0
      1000Updated Feb 14, 2017Feb 14, 2017
    • Tissue Analyser Plugin
      Java
      1090Updated Jul 27, 2016Jul 27, 2016
    • MAPPBuilder plugin for PathVisio
      Java
      Apache License 2.0
      2050Updated Mar 8, 2016Mar 8, 2016
    • Visualize regulatory interactions in the side panel of PathVisio
      Java
      Apache License 2.0
      1100Updated Dec 18, 2015Dec 18, 2015
    • PathVisio plugin to import and export pathways in BioPAX format
      Web Ontology Language
      Apache License 2.0
      3110Updated Apr 23, 2015Apr 23, 2015
    • MiPaSt

      Public
      miRNA pathway statistics plugin for PathVisio
      Java
      Apache License 2.0
      0000Updated Apr 13, 2015Apr 13, 2015
    • Plugin for PathVisio that adds a MiniMap side panel for navigation in large pathways
      0000Updated Sep 6, 2013Sep 6, 2013