Repositories list

• libGPML

  Public
  Java library for reading / writing GPML files

  Java

  •

  Apache License 2.0

  •5•4•5•1•Updated Dec 28, 2025Dec 28, 2025

• TestingGithub

  Public
  1•0•0•1•Updated Aug 6, 2025Aug 6, 2025

• pathvisio

  Public
  PathVisio - pathway editor, visualization and analysis software

  Java

  •

  Apache License 2.0

  •22•28•103•1•Updated Jan 22, 2025Jan 22, 2025

• plugin-repo

  Public
  Plugin repository for PathVisio

  HTML

  •

  Apache License 2.0

  •0•0•0•0•Updated Jan 22, 2025Jan 22, 2025

• pathvisio.github.io

  Public
  PathVisio website and tutorials (under development)

  HTML

  •

  MIT License

  •4•0•11•2•Updated Sep 3, 2024Sep 3, 2024

• pathvisio-book

  Public
  :book: PathVisio

  HTML

  •

  Creative Commons Zero v1.0 Universal

  •3•3•0•0•Updated Jan 15, 2024Jan 15, 2024

• pathvisio4-ant

  Public
  Java

  •

  Apache License 2.0

  •4•0•19•2•Updated Jan 27, 2023Jan 27, 2023

• libgpml-javadoc

  Public
  libGPML Java documentation

  HTML

  •0•0•0•0•Updated Aug 27, 2022Aug 27, 2022

• PathVisioRPC

  Public
  PathVisioRPC is an XML-RPC implementation of PathVisio that allows users to create and edit biological pathways, visualize data on pathways, perform pathway sta…

  Java

  •5•8•6•1•Updated Apr 1, 2022Apr 1, 2022

• homology.mapper

  Public
  GPML Homology Mapper

  Java

  •

  Apache License 2.0

  •2•0•1•0•Updated Mar 29, 2022Mar 29, 2022

• pathvisio4-maven

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Dec 2, 2021Dec 2, 2021

• BH2021

  Public
  biohackeu21

  biohackeu21

  MIT License

  •0•0•0•0•Updated Nov 11, 2021Nov 11, 2021

• GPML

  Public
  Graphical Pathway Markup Language

  Python

  •3•5•11•0•Updated Oct 21, 2021Oct 21, 2021

• OSSRH-73582

  Public
  0•0•0•0•Updated Sep 28, 2021Sep 28, 2021

• WP-plugin

  Public
  Plugin for PathVisio that provides a WikiPathways client.

  Java

  •

  Apache License 2.0

  •5•2•10•3•Updated Mar 31, 2020Mar 31, 2020

• GO-plugin

  Public
  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated May 1, 2019May 1, 2019

• RPathVisio

  Public
  R package for PathVisioRPC

  R

  •4•2•2•0•Updated Apr 1, 2019Apr 1, 2019

• tutorials

  Public
  Tutorials and workshop material for PathVisio

  3•0•0•0•Updated Oct 8, 2018Oct 8, 2018

• org.pathvisio.typeconverter

  Public
  Enables the conversion of pathway elements into other types (e.g. Label into Metabolite)

  Java

  •

  Apache License 2.0

  •1•1•5•1•Updated Apr 25, 2018Apr 25, 2018

• FindYourInteraction

  Public
  PathVisio plugin to find relevant metabolic reactions from Rhea

  reactionsmetabolismpathways+ 2

  reactionsmetabolismpathwaysmetabolic-pathwaysrhea

  Java

  •

  Apache License 2.0

  •1•1•1•0•Updated Apr 25, 2018Apr 25, 2018

• GSEA-plugin

  Public
  GSEA plugin for PathVisio

  pathwaygseapathvisio+ 2

  pathwaygseapathvisiogenesetspvplugin

  Java

  •1•0•1•0•Updated Dec 18, 2017Dec 18, 2017

• libGPML-old

  Public
  library to read/write GPML

  Java

  •

  Apache License 2.0

  •4•0•5•0•Updated Aug 24, 2017Aug 24, 2017

• PathwayLoom

  Public
  PathwayLoom plugin for PathVisio

  pathwaypathvisiopvplugin

  pathwaypathvisiopvplugin

  Java

  •

  Apache License 2.0

  •1•0•0•0•Updated Feb 14, 2017Feb 14, 2017

• org.pathvisio.tissueanalyzer

  Public
  Tissue Analyser Plugin

  Java

  •1•0•9•0•Updated Jul 27, 2016Jul 27, 2016

• mappbuilder

  Public
  MAPPBuilder plugin for PathVisio

  Java

  •

  Apache License 2.0

  •2•0•5•0•Updated Mar 8, 2016Mar 8, 2016

• RegInt-Plugin

  Public
  Visualize regulatory interactions in the side panel of PathVisio

  Java

  •

  Apache License 2.0

  •1•1•0•0•Updated Dec 18, 2015Dec 18, 2015

• biopax-plugin

  Public
  PathVisio plugin to import and export pathways in BioPAX format

  Web Ontology Language

  •

  Apache License 2.0

  •3•1•1•0•Updated Apr 23, 2015Apr 23, 2015

• MiPaSt

  Public
  miRNA pathway statistics plugin for PathVisio

  Java

  •

  Apache License 2.0

  •0•0•0•0•Updated Apr 13, 2015Apr 13, 2015

• pv-minimap

  Public
  Plugin for PathVisio that adds a MiniMap side panel for navigation in large pathways

  0•0•0•0•Updated Sep 6, 2013Sep 6, 2013