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@PhysiCell-Tools PhysiCell-Tools

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    15 repositories

    • PhysiCell-Studio

      Public
      PhysiCell Studio is a graphical tool to allow easy editing of a (XML) model, create initial positions of cells, run a simulation, and visualize results. To cont…
      Python
      •
      GNU General Public License v3.0
      •22•40•21•0•Updated Sep 1, 2026Sep 1, 2026

    • python-loader

      Public
      Python data loader for PhysiCell digital snapshots
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •16•10•0•0•Updated Aug 26, 2026Aug 26, 2026

    • pcstudio

      Public
      pcstudio is a repo for the online nanoHUB app
      C++
      •0•1•0•0•Updated Jun 11, 2026Jun 11, 2026

    • intracellular_libs

      Public
      Repo to host platform-specific libraries for intracellular solvers
      Python
      •1•0•0•0•Updated Feb 19, 2026Feb 19, 2026

    • vis3D

      Public
      Options to visualize data from a 3D model
      Python
      •2•0•0•0•Updated Jan 29, 2026Jan 29, 2026

    • Studio-Guide

      Public
      User Guide for PhysiCell Studio. Please report issues with the Guide in https://github.com/PhysiCell-Tools/Studio-Guide/issues.
      Creative Commons Zero v1.0 Universal
      •1•8•0•0•Updated Dec 15, 2025Dec 15, 2025

    • nanohub-studio-app

      Public
      Help build a nanoHUB app for a PhysiCell model with a Studio GUI
      0•0•0•0•Updated Aug 7, 2023Aug 7, 2023

    • python-scripts

      Public
      Useful Python scripts related to PhysiCell
      Python
      •2•0•0•0•Updated Sep 29, 2022Sep 29, 2022

    • PhysiCell-Jupyter-GUI

      Public
      Template Jupyter notebook for PhysiCell-powered nanoHUB apps
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •7•7•0•1•Updated Jun 23, 2022Jun 23, 2022

    • PhysiCell-Unity-explorer

      Public
      Provides a Unity scene explorer for PhysiCell data
      C#
      •1•0•0•1•Updated Feb 1, 2022Feb 1, 2022

    • PhysiCell-Fury

      Public
      Fury is a Python library for (3-D) scientific visualization. This repo provides utility scripts for using it for PhysiCell output data.
      Python
      •1•0•0•0•Updated Jul 21, 2021Jul 21, 2021

    • DAPT-example

      Public
      Simple examples showing how DAPT can be used with PhysiCell.
      physicelldapt
      physicelldapt
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •0•1•0•0•Updated Apr 30, 2021Apr 30, 2021

    • nanoHUB_scripts

      Public
      Assorted scripts for use on nanoHUB
      Shell
      •
      BSD 3-Clause "New" or "Revised" License
      •1•0•0•0•Updated Oct 9, 2019Oct 9, 2019

    • matlab-loader

      Public
      Matlab data loader
      BSD 3-Clause "New" or "Revised" License
      •0•2•0•0•Updated Sep 7, 2019Sep 7, 2019

    • PhysiCell-povwriter

      Public
      Simple cutaway POV-Ray
      C++
      •
      BSD 3-Clause "New" or "Revised" License
      •4•3•0•1•Updated Sep 6, 2019Sep 6, 2019
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