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    • renci-ner

      Public
      A library for accessing RENCI NER services
      Python
      MIT License
      0291Updated Mar 16, 2026Mar 16, 2026
    • Serval

      Public
      Systematic Entity Recognition Validator
      MIT License
      0001Updated Mar 16, 2026Mar 16, 2026
    • Python
      MIT License
      1100Updated Dec 4, 2025Dec 4, 2025
    • Helm charts repo for NER deployments
      Smarty
      1000Updated Oct 30, 2025Oct 30, 2025
    • Bagel

      Public
      Python
      MIT License
      3011Updated Oct 14, 2025Oct 14, 2025
    • sapbert

      Public
      [NAACL & ACL 2021] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
      Python
      MIT License
      39050Updated Jun 24, 2025Jun 24, 2025
    • Web server for serving trained NER models using Nemo
      Python
      Apache License 2.0
      00153Updated Sep 25, 2024Sep 25, 2024
    • Conversion of data in Pubtator format (e.g., MedMentions data) into JSON format as a benchmarking dataset for validating Bagel NER performance.
      Python
      MIT License
      0000Updated Aug 31, 2024Aug 31, 2024
    • Benchmarks and results in comparing between NER engines
      Python
      MIT License
      0061Updated Aug 30, 2024Aug 30, 2024
    • Jupyter Notebook
      Creative Commons Zero v1.0 Universal
      2000Updated Jul 10, 2022Jul 10, 2022
    • An instance of OGER that we can benchmark
      Python
      MIT License
      0020Updated Jun 26, 2022Jun 26, 2022
    • Benchmarks for the MedType NER tool
      Python
      0001Updated May 17, 2022May 17, 2022
    • nemo-ner

      Public
      Training models for NER with Nemo tookit
      Python
      0000Updated Apr 29, 2022Apr 29, 2022
    • Converts pubmed ds json format to IOB format
      Python
      0000Updated Mar 18, 2022Mar 18, 2022
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