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@RENCI-NER RENCI Named Entity Recognition (NER) Working Group

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    14 repositories

    • renci-ner

      Public
      A library for accessing RENCI NER services
      Python
      •
      MIT License
      •0•2•9•1•Updated Mar 16, 2026Mar 16, 2026

    • Serval

      Public
      Systematic Entity Recognition Validator
      MIT License
      •0•0•0•1•Updated Mar 16, 2026Mar 16, 2026

    • pred-mapping

      Public
      Python
      •
      MIT License
      •1•1•0•0•Updated Dec 4, 2025Dec 4, 2025

    • Helm-charts

      Public
      Helm charts repo for NER deployments
      Smarty
      •1•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • Bagel

      Public
      Python
      •
      MIT License
      •3•0•1•1•Updated Oct 14, 2025Oct 14, 2025

    • sapbert

      Public
      [NAACL & ACL 2021] SapBERT: Self-alignment pretraining for BERT & XL-BEL: Cross-Lingual Biomedical Entity Linking.
      Python
      •
      MIT License
      •39•0•5•0•Updated Jun 24, 2025Jun 24, 2025

    • nemo-serve

      Public
      Web server for serving trained NER models using Nemo
      Python
      •
      Apache License 2.0
      •0•0•15•3•Updated Sep 25, 2024Sep 25, 2024

    • PubtatorToJSON

      Public
      Conversion of data in Pubtator format (e.g., MedMentions data) into JSON format as a benchmarking dataset for validating Bagel NER performance.
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 31, 2024Aug 31, 2024

    • benchmarks

      Public
      Benchmarks and results in comparing between NER engines
      Python
      •
      MIT License
      •0•0•6•1•Updated Aug 30, 2024Aug 30, 2024

    • ontorunner

      Public
      Jupyter Notebook
      •
      Creative Commons Zero v1.0 Universal
      •2•0•0•0•Updated Jul 10, 2022Jul 10, 2022

    • oger-benchmarks

      Public
      An instance of OGER that we can benchmark
      Python
      •
      MIT License
      •0•0•2•0•Updated Jun 26, 2022Jun 26, 2022

    • medtype-benchmarks

      Public
      Benchmarks for the MedType NER tool
      Python
      •0•0•0•1•Updated May 17, 2022May 17, 2022

    • nemo-ner

      Public
      Training models for NER with Nemo tookit
      Python
      •0•0•0•0•Updated Apr 29, 2022Apr 29, 2022

    • PubMedDS2BIO

      Public
      Converts pubmed ds json format to IOB format
      Python
      •0•0•0•0•Updated Mar 18, 2022Mar 18, 2022
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