Repositories list

• AlbaoRunx3Manuscript

  Public
  Code for the analysis of scRNAseq data from Albao et al.

  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 31, 2026Mar 31, 2026

• CommonGeneSets

  Public
  Repository of gene sets used by the Pipkin Lab for Gene Set Enrichment Analysis

  R

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•11 star•22 issues•00 pull requests•Updated Jan 9, 2026Jan 9, 2026

• ATAC-seqPipeline

  Public
  NGS analysis pipeline for ATAC-seq experiments.

  pipelinegenomicsngs+ 1

  pipelinegenomicsngsatac-seq

  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 6, 2023Jan 6, 2023

• CD8_DEV_SC

  Public
  Jupyter Notebook

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•22 stars•00 issues•00 pull requests•Updated Sep 15, 2022Sep 15, 2022

• ThymusColonization_Modelling

  Public
  Modeling the kinetics of thyme colonization.

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 12, 2022Sep 12, 2022

• GenomeTracks

  Public
  Genome browser tracks for sharing

  Shell

  •

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•11 issue•00 pull requests•Updated Mar 3, 2022Mar 3, 2022

• CRF_Screen

  Public
  HTML

  •00 forks•11 star•00 issues•00 pull requests•Updated Jun 24, 2021Jun 24, 2021

• 202104_Sundrud_ATAC

  Public
  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 9, 2021Apr 9, 2021

• Exp337CD25KONascent_new

  Public
  Jupyter Notebook

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 16, 2021Mar 16, 2021

• ReferenceGenomeMaintainance

  Public
  00 forks•00 stars•00 issues•00 pull requests•Updated Jan 6, 2021Jan 6, 2021

• Exp174_DPW_Runx3_RNAseq

  Public
  HTML

  •00 forks•00 stars•00 issues•00 pull requests•Updated May 20, 2020May 20, 2020

• JYC_DataAnalysis

  Public
  11 fork•00 stars•00 issues•00 pull requests•Updated Jan 28, 2020Jan 28, 2020