Repositories list

• alphasplitter

  Public
  Rust

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 21, 2026Apr 21, 2026

• extracTR

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• ArraySplitter

  Public
  ArraySplitter: De Novo Decomposition of Satellite DNA Arrays into Monomers within Telomere-to-Telomere Assemblies

  Python

  •

  MIT License

  •00 forks•11 star•11 issue•00 pull requests•Updated Mar 11, 2026Mar 11, 2026

• alpha_fold_viewer

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Feb 8, 2026Feb 8, 2026

• satellome

  Public
  Python

  •

  MIT License

  •00 forks•77 stars•1111 issues•00 pull requests•Updated Jan 31, 2026Jan 31, 2026

• morphoBPE

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 21, 2026Jan 21, 2026

• TRF

  Public
  Tandem Repeats Finder: a program to analyze DNA sequences

  C

  •

  GNU Affero General Public License v3.0

  •3333 forks•00 stars•00 issues•00 pull requests•Updated Nov 5, 2025Nov 5, 2025

• TandemMark

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Oct 2, 2025Oct 2, 2025

• varprofiler

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 29, 2025Sep 29, 2025

• TRAKD

  Public
  C++

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jul 3, 2025Jul 3, 2025

• GenomNomNom

  Public
  GenomNomNom – A playful tool for munching through genomes: finds genes, counts start/stop codons, analyzes ORFs, and compares annotation strategies.

  Python

  •

  MIT License

  •00 forks•33 stars•00 issues•00 pull requests•Updated Jun 5, 2025Jun 5, 2025

• TokPos

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 23, 2025Apr 23, 2025

• CsCl

  Public
  C++

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Apr 1, 2025Apr 1, 2025

• yatomat

  Public
  Python

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jan 14, 2025Jan 14, 2025

• masters-course-2024-make-agent-workshop

  Public
  MIT License

  •00 forks•77 stars•00 issues•00 pull requests•Updated Jan 14, 2025Jan 14, 2025

• dnaBPE

  Public
  C++

  •

  MIT License

  •00 forks•55 stars•00 issues•00 pull requests•Updated Dec 9, 2024Dec 9, 2024

• Tools

  Public
  Python

  •00 forks•11 star•00 issues•00 pull requests•Updated Sep 23, 2024Sep 23, 2024

• masters-course-2024-make-jarvis-workshop

  Public
  MIT License

  •00 forks•11 star•00 issues•00 pull requests•Updated Aug 26, 2024Aug 26, 2024

• masters-course-2024-genome-bioinformatics

  Public
  Draft of the practice for genome bioinformatics

  MIT License

  •00 forks•22 stars•55 issues•00 pull requests•Updated Mar 28, 2024Mar 28, 2024

• masters-course-2023-data-software-tools

  Public
  HTML

  •3434 forks•22 stars•00 issues•00 pull requests•Updated Dec 9, 2023Dec 9, 2023

• OantigenMiner

  Public
  Wonderful O-antigens Operons Finder

  bioinformaticsbacteriabacterial-genomes+ 4

  bioinformaticsbacteriabacterial-genomesoperonso-antigenssomatic-antigensoperon-visualization

  Jupyter Notebook

  •

  MIT License

  •00 forks•22 stars•11 issue•22 pull requests•Updated Sep 30, 2023Sep 30, 2023

• masters-course-2023-functional-genomics

  Public
  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 15, 2023Sep 15, 2023

• XAP_2023

  Public
  X-AP: Experimental Anatomy of Python

  Creative Commons Zero v1.0 Universal

  •00 forks•00 stars•00 issues•00 pull requests•Updated Sep 5, 2023Sep 5, 2023

• HiCPilot

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 13, 2023Aug 13, 2023

• DecodingViralDance

  Public
  Jupyter Notebook

  •

  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Aug 13, 2023Aug 13, 2023

• ressurectdb

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 19, 2023Jun 19, 2023

• beyondT2T

  Public
  MIT License

  •00 forks•00 stars•00 issues•00 pull requests•Updated Jun 19, 2023Jun 19, 2023

• Primates

  Public
  Complete assemblies of non-human primate genomes

  Other

  •44 forks•11 star•00 issues•00 pull requests•Updated May 9, 2023May 9, 2023

• Thiomargarita_magnifica

  Public
  Reassembly and annotation of Thiomargarita magnifica

  HTML

  •00 forks•00 stars•44 issues•00 pull requests•Updated May 1, 2023May 1, 2023

• tokenology

  Public
  DNA and tokens

  C++

  •11 fork•00 stars•00 issues•00 pull requests•Updated Apr 6, 2023Apr 6, 2023