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@donaldsonlab Donaldson Lab

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    Repositories list

    27 repositories

    • Interbrain_correlation

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Jun 3, 2026Jun 3, 2026

    • makenzie_operant

      Public
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 14, 2026May 14, 2026

    • snRNAseq_voles

      Public
      snRNA-seq analysis of nucleus accumbens tissue from prairie voles
      Jupyter Notebook
      •
      MIT License
      •0•0•0•0•Updated Apr 29, 2026Apr 29, 2026

    • PhAT

      Public
      A flexible open-source GUI-driven toolkit for photometry analysis
      pythonguiplotly
      pythonguiplotlyvisualization-toolsfiber-photometry
      Python
      •
      MIT License
      •2•8•2•0•Updated Dec 10, 2025Dec 10, 2025

    • NAcInhib

      Public
      Codebase accompanying the manuscript: "Accumbal calcium-permeable AMPA receptors orchestrate neuronal ensembles underlying social attachment"
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Aug 19, 2025Aug 19, 2025

    • RNAscope-paper

      Public
      Jupyter Notebook
      •0•1•0•0•Updated Apr 2, 2025Apr 2, 2025

    • Operant-Cage

      Public
      C++
      •1•1•0•0•Updated Dec 18, 2024Dec 18, 2024

    • PPT-Chamber

      Public
      Files to fabricate Partner Preference Test chambers
      0•0•0•0•Updated Oct 31, 2024Oct 31, 2024

    • pi_IP_screen

      Public
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 22, 2024Oct 22, 2024

    • Pierce2023_Currentbiology

      Public
      0•0•0•0•Updated Nov 28, 2023Nov 28, 2023

    • Home_Cage

      Public
      Project Development for the Home Cage Experiment and Environment
      Python
      •0•0•0•0•Updated Jul 24, 2023Jul 24, 2023

    • separationRNAseq

      Public
      HTML
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Apr 13, 2023Apr 13, 2023

    • CleversysSummaryRearranger

      Public
      To rearrange the summary file from Cleversys and put it in a usable format
      Jupyter Notebook
      •0•0•0•0•Updated Feb 7, 2023Feb 7, 2023

    • Lickometer

      Public
      Initial Lickometer Upload
      C++
      •1•1•0•0•Updated Jul 1, 2022Jul 1, 2022

    • Npm-Analysis-inprogress

      Public
      Where we will publish the fiber pho analysis
      0•0•0•0•Updated May 23, 2022May 23, 2022

    • Cleversys_scripts

      Public
      python scripts for parsing cleversys output
      Jupyter Notebook
      •1•0•0•0•Updated Mar 22, 2022Mar 22, 2022

    • BlackWhiteCage

      Public
      This chamber has an open-topped half painted white and an enclosed half painted black
      0•0•0•0•Updated Feb 23, 2022Feb 23, 2022

    • fiberphotometry

      Public
      Python
      •0•0•0•0•Updated Aug 30, 2021Aug 30, 2021

    • RampCage

      Public
      Development for the Ramp Cage with a wheel, IR beam break, and servo brake
      C++
      •0•0•0•0•Updated Jul 20, 2021Jul 20, 2021

    • UI-lab-capture

      Public
      An interface designed to make the scientists job easier by providing a simple, yet effective way of setting up their cameras and starting their data collection.…
      pythonguianaconda
      pythonguianacondaspinnakerlabjacku3-lvflirblackflysvolesvole
      Python
      •1•0•0•0•Updated Apr 7, 2020Apr 7, 2020

    • monogamousreunion

      Public
      This repository houses the analytical code for the paper, "A neuronal signature for monogamous reunion".
      MATLAB
      •0•0•0•0•Updated Mar 10, 2020Mar 10, 2020

    • Imaging-Paper

      Public
      Code and data related the imaging paper, "A Neuronal Signature for Monogamous Reunion".
      MATLAB
      •0•0•0•0•Updated Mar 10, 2020Mar 10, 2020

    • DonaldsonDLC

      Public
      Using markerless pose estimation to quantify mating bouts.
      Python
      •0•1•0•0•Updated Feb 21, 2020Feb 21, 2020

    • Documents

      Public
      A repo to house various documents used by the lab.
      labscience-researchvole
      labscience-researchvoledonaldson
      Python
      •0•0•0•0•Updated Feb 21, 2020Feb 21, 2020

    • Tilt_Cage

      Public
      Development for the tilting choice chamber
      C++
      •0•0•0•0•Updated Jan 28, 2020Jan 28, 2020

    • vole_surgery_registry

      Public
      Ruby
      •1•0•0•0•Updated Dec 11, 2019Dec 11, 2019

    • DLC_Helper

      Public
      Designed to making setting up a markerless pose estimation of user-defined features with deep learning for all animals, including humans
      pythondeep-learninganaconda
      pythondeep-learninganacondadeeplabcut
      Python
      •
      MIT License
      •0•0•0•0•Updated Jul 19, 2019Jul 19, 2019
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