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    27 repositories

    • Workflows_and_package_management

      Public
      Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).
      Python
      •59•2•0•1•Updated May 28, 2026May 28, 2026

    • Python4BioinformaticsV2

      Public
      Updated materials for MSc Bioinformatics for Pwani University
      Jupyter Notebook
      •73•0•0•0•Updated Feb 1, 2025Feb 1, 2025

    • ONTmetacriptom-NF

      Public
      A nextflow workflow to analyse long reads from oxford nano-pore technology
      Shell
      •
      MIT License
      •1•0•0•0•Updated Mar 23, 2023Mar 23, 2023

    • mini-projects-2022

      Public
      For the Residential Training Mini-projects
      2•0•7•0•Updated Aug 5, 2022Aug 5, 2022

    • MyFirstFork

      Public
      Fork this repository and make changes to the README
      106•0•0•0•Updated Nov 5, 2021Nov 5, 2021

    • IntroductoryLinux-2019

      Public
      Shell
      •14•2•0•0•Updated Nov 2, 2021Nov 2, 2021

    • mini-projects-2021

      Public
      8•0•3•0•Updated Aug 18, 2021Aug 18, 2021

    • IntroductoryGit

      Public
      Creative Commons Attribution 4.0 International
      •23•1•0•0•Updated Aug 5, 2021Aug 5, 2021

    • augustus_parallel

      Public
      Run AUGUSTUS gene prediction in parallel
      Shell
      •
      MIT License
      •4•0•0•0•Updated Jun 12, 2021Jun 12, 2021

    • Group-5-miniproject_RNASEQ

      Public
      A collaborative project on RNA sequencing_Gene expression analysis
      HTML
      •11•0•0•0•Updated Aug 28, 2020Aug 28, 2020

    • Mini-project-group-06

      Public
      HTML
      •8•0•0•0•Updated Aug 28, 2020Aug 28, 2020

    • Group_1-Reproducible-CCBG-pipeline

      Public
      Python
      •8•0•0•0•Updated Aug 28, 2020Aug 28, 2020

    • EANBiT-RT2020

      Public
      Website for the 2019 iteration of EANBiT Residential Training.
      CSS
      •6•0•0•0•Updated Jul 27, 2020Jul 27, 2020

    • Genomics

      Public
      Geomics and metagenomics workshop
      HTML
      •0•0•0•0•Updated Jul 24, 2020Jul 24, 2020

    • mini-projects-2020

      Public
      Mini-projects for the 2020 EANBiT virtual training.
      19•0•6•0•Updated Jul 10, 2020Jul 10, 2020

    • EANBiT2020_RT_Participants

      Public
      28•0•1•5•Updated Jul 8, 2020Jul 8, 2020

    • EANBiT-RT2019

      Public
      Website for the 2019 iteration of EANBiT Residential Training.
      CSS
      •8•1•1•0•Updated Jun 2, 2020Jun 2, 2020

    • DataCuration

      Public
      Training Resources for H3A Fellows Training
      0•0•0•0•Updated Feb 26, 2020Feb 26, 2020

    • Intro2MachineLearning

      Public
      Jupyter Notebook
      •12•0•0•0•Updated Jul 19, 2019Jul 19, 2019

    • ReproducibleResearch

      Public
      Additional Training materials for workflows and package management
      Python
      •
      MIT License
      •4•0•0•0•Updated Jul 16, 2019Jul 16, 2019

    • R_Rmarkdown_Shiny

      Public
      This repository is meant for the R part of the EANBiT 2019 residential training
      R
      •4•0•0•0•Updated Jul 12, 2019Jul 12, 2019

    • Phylogenetics

      Public
      This is the repository for the module on phylogenetics (Thursday 11 July 2019)
      11•1•0•0•Updated Jul 11, 2019Jul 11, 2019

    • Scientific_presentation_skills

      Public
      3•0•0•0•Updated Jul 6, 2019Jul 6, 2019

    • mini-projects-19

      Public
      Mini-projects for the residential training
      5•0•5•0•Updated Jul 5, 2019Jul 5, 2019

    • Biological_databases_API

      Public
      An introduction to Biological Databases and how the API can be used to access data
      Jupyter Notebook
      •11•2•0•0•Updated Jul 4, 2019Jul 4, 2019

    • Reproduce_genomic_analysis

      Public
      Reproduce the genomic analysis carried out in a paper
      0•0•0•0•Updated Jun 28, 2019Jun 28, 2019

    • Variant_calling_pipeline

      Public
      Convert a Variant Calling Pipeline to a workflow language of choice
      0•0•0•0•Updated Jun 28, 2019Jun 28, 2019
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