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    • Tools for fiberseq data written in rust.
      Rust
      106772Updated Jun 2, 2026Jun 2, 2026
    • The guide to DAF-seq: wet lab protocols and computational best practices
      3300Updated Jun 1, 2026Jun 1, 2026
    • FIRE

      Public
      A Snakemake workflow for calling Fiber-seq Inferred Regulatory Elements (FIREs) on single molecules.
      Python
      MIT License
      62992Updated May 27, 2026May 27, 2026
    • FiberHMM

      Public
      HMM-based footprint caller for single molecule footprinting data
      Python
      MIT License
      2510Updated May 25, 2026May 25, 2026
    • QC plots and statistics
      Shell
      GNU General Public License v3.0
      21110Updated May 13, 2026May 13, 2026
    • Rust
      MIT License
      1320Updated May 12, 2026May 12, 2026
    • Source for "The computational guide to Fiber-seq"
      Python
      3600Updated Apr 22, 2026Apr 22, 2026
    • .github

      Public
      0000Updated Jul 25, 2024Jul 25, 2024
    • ML methods for m6A-calling
      Jupyter Notebook
      MIT License
      1501Updated Apr 18, 2024Apr 18, 2024
    • fiberseq-smk

      Public archive
      Snakemake pipeline for processing fiberseq data
      Python
      MIT License
      0300Updated Jan 11, 2024Jan 11, 2024
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