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    65 repositories

    • Intro-to-spatial-transcriptomics

      Public
      This is a repository for the Introduction to Spatial Transcriptomics course materials
      R
      •1•1•2•0•Updated May 1, 2026May 1, 2026

    • main

      Public template
      SCSS
      •
      Other
      •17•58•0•1•Updated Apr 30, 2026Apr 30, 2026

    • Intro-to-Python

      Public
      CSS
      •0•0•3•0•Updated Apr 23, 2026Apr 23, 2026

    • Training-modules

      Public
      Materials for short, half-day workshops
      Jupyter Notebook
      •
      Other
      •154•349•18•3•Updated Apr 15, 2026Apr 15, 2026

    • Intro-to-R-flipped

      Public
      CSS
      •44•93•0•0•Updated Apr 15, 2026Apr 15, 2026

    • Tools-for-reproducible-research

      Public
      R
      •10•13•15•0•Updated Apr 15, 2026Apr 15, 2026

    • spatial_nanocourse

      Public
      Module for Visium HD analysis for Nanocourse organized by SCC
      HTML
      •2•3•7•0•Updated Mar 20, 2026Mar 20, 2026

    • FoG_scRNA-seq_viz

      Public
      https://hbctraining.github.io/FoG_scRNA-seq_viz/
      CSS
      •
      Creative Commons Zero v1.0 Universal
      •1•1•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Pseudobulk-for-scRNAseq-Quarto

      Public
      CSS
      •1•4•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-R-Quarto

      Public
      R
      •2•1•2•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-RShiny

      Public
      CSS
      •0•1•2•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-rnaseq-hpc-gt

      Public
      Introduction to RNA-seq using HPC
      Shell
      •19•11•1•0•Updated Mar 20, 2026Mar 20, 2026

    • In-depth-NGS-Data-Analysis-Course-1

      Public
      HTML
      •
      Other
      •266•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-R-online-Catalyst

      Public
      Contains materials for an online version of the Introduction to R
      SCSS
      •2•4•0•0•Updated Mar 20, 2026Mar 20, 2026

    • versioning_data_scripts

      Public
      GitKraken lesson (forked from HBS-RCS)
      R
      •22•10•1•0•Updated Mar 20, 2026Mar 20, 2026

    • Rmarkdown_analysis_reports

      Public
      rrmarkdownreports
      rrmarkdownreports
      SCSS
      •3•4•2•0•Updated Mar 20, 2026Mar 20, 2026

    • GCC-BOSC-2018

      Public
      Lessons for "Setting up for Success when planning an RNA-seq experiment" session at GCC-BOSC 2018
      HTML
      •
      Other
      •12•5•1•0•Updated Mar 20, 2026Mar 20, 2026

    • rnaseq_overview

      Public
      Short course describing the considerations for a successful RNA-seq experiment
      HTML
      •
      Other
      •13•19•9•0•Updated Mar 20, 2026Mar 20, 2026

    • RNA-seq-CB321qc_2022

      Public
      Teaching RNA-seq experimental design and analysis + data storage and sharing for genomics data
      SCSS
      •5•3•0•0•Updated Mar 20, 2026Mar 20, 2026

    • rnaseq-cb321

      Public
      June 5, 2019
      HTML
      •3•9•0•0•Updated Mar 20, 2026Mar 20, 2026

    • bioinformatics_online

      Public
      Resource list and preparation instructions for online learning and teaching for Bioinformatics
      bioinformatics-learningbioinformatics-learning-resourcesbioinformatics-online
      bioinformatics-learningbioinformatics-learning-resourcesbioinformatics-online
      SCSS
      •10•19•0•0•Updated Mar 20, 2026Mar 20, 2026

    • BBS230B_2023

      Public
      RNA-seq experimental design and analysis
      SCSS
      •5•4•0•0•Updated Mar 20, 2026Mar 20, 2026

    • EpiR

      Public
      Introduction to R for Epi summer program
      SCSS
      •4•3•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Accessing_public_genomic_data

      Public
      Tutorials on accessing public reference and genomic data
      HTML
      •16•32•2•0•Updated Mar 20, 2026Mar 20, 2026

    • Pseudobulk-for-scRNAseq

      Public
      Approaches for looking at differential expression and differential abundance in scRNA-seq
      R
      •
      Creative Commons Zero v1.0 Universal
      •4•9•8•0•Updated Mar 20, 2026Mar 20, 2026

    • collaborations

      Public
      Collaborations across campus
      SCSS
      •0•0•0•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-DGE

      Public
      HTML
      •87•217•3•0•Updated Mar 20, 2026Mar 20, 2026

    • Intro-to-peak-analysis

      Public
      An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq
      Shell
      •
      Creative Commons Zero v1.0 Universal
      •6•40•7•0•Updated Mar 20, 2026Mar 20, 2026

    • BMI714_Intro_to_HPC

      Public
      Shell
      •
      Other
      •14•7•0•0•Updated Mar 20, 2026Mar 20, 2026

    • external

      Public
      SCSS
      •
      Creative Commons Zero v1.0 Universal
      •0•0•1•0•Updated Mar 20, 2026Mar 20, 2026
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