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    38 repositories

    • ic_erick

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Apr 27, 2026Apr 27, 2026

    • labbcb.github.io

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Aug 17, 2024Aug 17, 2024

    • labbcb2.github.io

      Public
      A beautiful, simple, clean, and responsive Jekyll theme for academics
      JavaScript
      •
      MIT License
      •13k•0•0•0•Updated Aug 16, 2024Aug 16, 2024

    • brave

      Public
      BIPMed Variant Explorer
      Go
      •
      GNU General Public License v3.0
      •0•0•0•1•Updated Dec 19, 2023Dec 19, 2023

    • rnnr

      Public
      Distributed task execution system for scaling reproducible workflows
      Go
      •
      GNU General Public License v3.0
      •0•2•0•4•Updated Jul 5, 2023Jul 5, 2023

    • espresso-caller

      Public
      Automated and reproducible tool for identifying genomic variants at scale ☕️
      bioinformaticsopenapiga4gh
      bioinformaticsopenapiga4ghwescromwelltes
      WDL
      •
      MIT License
      •0•0•3•1•Updated Dec 8, 2022Dec 8, 2022

    • Rqc

      Public
      Quality Control Tool for High-Throughput Sequencing Data
      R
      •1•0•3•0•Updated Jul 28, 2021Jul 28, 2021

    • MethylMetrics

      Public
      R
      •0•0•0•0•Updated Jul 4, 2021Jul 4, 2021

    • methylcx

      Public
      Context-aware cytosine methylation extraction toolkit for high-throughput sequencing data
      Rust
      •
      MIT License
      •0•0•6•0•Updated Jun 4, 2021Jun 4, 2021

    • reproducible-analysis

      Public template
      Example of reproducible genomics data analysis
      HTML
      •0•0•0•0•Updated Nov 17, 2020Nov 17, 2020

    • covid19unicamp

      Public
      Modelos Preditivos para Novos Casos e Óbitos (Força-Tarefa COVID-19 UNICAMP)
      HTML
      •2•6•1•0•Updated Oct 12, 2020Oct 12, 2020

    • workflows

      Public
      Reproducible Workflows for Genomics Research
      bioinformaticswdlcwl
      bioinformaticswdlcwl
      WDL
      •
      MIT License
      •1•0•0•0•Updated Jul 20, 2020Jul 20, 2020

    • oldsite

      Public
      HTML
      •
      MIT License
      •0•0•0•0•Updated Apr 30, 2020Apr 30, 2020

    • hpexome

      Public
      An automated tool for processing whole-exome sequencing data
      bioinformaticsqueuegatk
      bioinformaticsqueuegatkwhole-exome-sequencing
      Python
      •
      GNU General Public License v3.0
      •5•2•0•0•Updated Apr 21, 2020Apr 21, 2020

    • COVID-19-R-Shiny-Dashboard

      Public
      R
      •1•0•0•0•Updated Apr 7, 2020Apr 7, 2020

    • covid19

      Public
      R
      •0•0•0•0•Updated Mar 23, 2020Mar 23, 2020

    • bipmed-analysis

      Public
      0•0•0•0•Updated Mar 18, 2020Mar 18, 2020

    • dockerfiles

      Public
      Docker application images for bioinformatics tools
      Dockerfile
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Feb 22, 2020Feb 22, 2020

    • methseq

      Public archive
      Automation tool for high-throughput sequencing DNA methylation data
      wdlwgbscromwell
      wdlwgbscromwellem-seq
      WDL
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 13, 2020Feb 13, 2020

    • wf

      Public archive
      Workflow submission tool
      Go
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 18, 2019Dec 18, 2019

    • wftools

      Public archive
      Workflow and task management for genomics research
      Python
      •
      MIT License
      •0•0•0•0•Updated Aug 17, 2019Aug 17, 2019

    • pdInfoBuilder

      Public
      R
      •0•0•0•0•Updated Nov 19, 2018Nov 19, 2018

    • docker-lovd

      Public
      Docker image for LOVD server
      Shell
      •0•1•0•0•Updated Mar 28, 2018Mar 28, 2018

    • docker-ga4gh-server

      Public archive
      Docker image for hosting GA4GH reference implementation server
      dockerbioinformaticsgenomics
      dockerbioinformaticsgenomicsga4gh
      Python
      •0•0•0•0•Updated Jan 15, 2018Jan 15, 2018

    • academic-kickstart

      Public
      Easily create a beautiful website using Academic
      TeX
      •
      MIT License
      •6.5k•0•0•0•Updated Dec 11, 2017Dec 11, 2017

    • GA4GHclient

      Public
      A Bioconductor package for accessing GA4GH API data servers
      R
      •0•1•1•0•Updated Nov 10, 2017Nov 10, 2017

    • GA4GHshiny

      Public
      Shiny application for interacting with GA4GH-based data servers
      R
      •1•2•2•0•Updated Nov 10, 2017Nov 10, 2017

    • docker-ga4gh-shiny

      Public archive
      Docker image for GA4GHshiny application server
      dockerclientgenomics
      dockerclientgenomicsshinybioconductorga4gh
      R
      •0•1•0•0•Updated Sep 26, 2017Sep 26, 2017

    • docker-ga4gh-1kgenomes

      Public archive
      Docker image for GA4GH reference server with 1000 Genomes Project data
      Shell
      •0•0•0•0•Updated Jun 1, 2017Jun 1, 2017

    • docker-ga4gh-example

      Public archive
      Docker image for GA4GH reference server with example data
      0•0•0•0•Updated May 30, 2017May 30, 2017
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