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    22 repositories

    • seeding-crystals

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 23, 2026Feb 23, 2026

    • structural-color

      Public
      Python package for modeling structural color in colloidal systems
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •14•17•14•0•Updated Jan 4, 2026Jan 4, 2026

    • python-mie

      Public
      Pure python library for Mie scattering calculations
      Python
      •
      GNU General Public License v3.0
      •8•10•2•0•Updated Sep 15, 2025Sep 15, 2025

    • patch-probe-code

      Public
      Code for designing microarrays and analyzing data for patch-probe experiments on RNA structure
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated May 8, 2025May 8, 2025

    • flyvbjerg-std-err

      Public
      Python
      •
      Other
      •2•3•0•0•Updated Apr 21, 2025Apr 21, 2025

    • holopy

      Public
      Hologram processing and light scattering in python
      Python
      •
      GNU General Public License v3.0
      •52•169•29•2•Updated Feb 25, 2025Feb 25, 2025

    • disassembly-of-virus-like-particles-simulations

      Public
      Code to run simulations described in "Disassembly of virus-like particles..." journal article
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 8, 2025Jan 8, 2025

    • colloids-on-cones-code

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jan 5, 2025Jan 5, 2025

    • holopy-feedstock

      Public
      A conda-smithy repository for holopy.
      BSD 3-Clause "New" or "Revised" License
      •6•0•0•0•Updated Nov 30, 2024Nov 30, 2024

    • arbitrary-topology-code

      Public
      Rich Text Format
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Mar 23, 2024Mar 23, 2024

    • arbitrary-topology-stl

      Public
      STL files for four strand braiding machine
      Other
      •0•0•0•0•Updated Mar 23, 2024Mar 23, 2024

    • cone-disk-packings

      Public
      Code for simulations of disk packings on cones
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•1•0•0•Updated Oct 3, 2023Oct 3, 2023

    • applied-optics-iscat-code

      Public
      Code used for analysis of iSCAT data in 2023 Applied Optics paper
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •1•4•0•0•Updated Sep 13, 2023Sep 13, 2023

    • capillary-stl

      Public
      STL files for capillary machines
      Other
      •0•1•0•0•Updated Jul 26, 2022Jul 26, 2022

    • mstm-wrapper

      Public
      Python wrapper around Daniel Mackowski's MSTM scattering code
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •6•6•0•1•Updated Jul 23, 2021Jul 23, 2021

    • pydls

      Public
      Python module designed for the Bayesian inference of particle size distributions from dynamic light scattering data, using a Python implementation of Monte Carl…
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jul 21, 2020Jul 21, 2020

    • camera-controller

      Public
      User interface to control digital cameras. In particular, we develop this software for cameras attached to microscopes.
      Python
      •12•9•8•0•Updated Oct 11, 2018Oct 11, 2018

    • DNA-colloid-design

      Public
      Code to design DNA and calculate melting profiles for 0, 1, and 2 strand displacement reactions between colloids.
      MATLAB
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Aug 26, 2017Aug 26, 2017

    • staged-recipes

      Public
      A place to submit conda recipes before they become fully fledged conda-forge feedstocks
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •5.9k•1•0•0•Updated Jul 11, 2017Jul 11, 2017

    • virus-ejection

      Public
      Statistical inference on experimental measurements of DNA ejection from bacteriophages
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Oct 26, 2016Oct 26, 2016

    • holopy-legacy-reader

      Public
      Convert files from holopy 2 yaml files to holopy 3 hdf5 files
      Python
      •
      GNU General Public License v3.0
      •0•0•2•0•Updated Oct 20, 2016Oct 20, 2016

    • pynucleic

      Public
      Calculates thermodynamic properties of nucleic acid duplexes using the nearest-neighbor model
      Python
      •
      GNU General Public License v3.0
      •0•2•0•0•Updated Aug 29, 2016Aug 29, 2016
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