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    28 repositories

    • nobrainer

      Public
      A framework for developing neural network models for 3D image processing.
      machine-learningtensorflowmedical-imaging
      machine-learningtensorflowmedical-imagingneuroimagingsemantic-segmentation
      Python
      •
      Other
      •43•166•61•2•Updated Apr 14, 2026Apr 14, 2026

    • nobrainer-book

      Public
      Tutorial and guides for the Nobrainer framework
      1•1•1•0•Updated Mar 29, 2026Mar 29, 2026

    • nobrainer-runner

      Public
      GPU test dispatcher and job runner for nobrainer (Slurm / AWS / GCP)
      Python
      •0•0•0•0•Updated Mar 14, 2026Mar 14, 2026

    • tissue_labeling

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jul 23, 2024Jul 23, 2024

    • nobrainer_training_scripts

      Public
      Jupyter Notebook
      •2•1•6•1•Updated Jul 22, 2024Jul 22, 2024

    • test-aws

      Public
      Dockerfile
      •0•0•0•3•Updated Feb 27, 2024Feb 27, 2024

    • build-docker

      Public
      Repository to build docker images using github actions
      Dockerfile
      •1•0•1•1•Updated Feb 15, 2024Feb 15, 2024

    • trained-models

      Public
      Trained TensorFlow models for 3D image processing
      neuroimagingsegmentationpretrained-models
      neuroimagingsegmentationpretrained-modelskeras-models3d-modelstensorflow-models
      Python
      •16•28•24•3•Updated Jan 31, 2024Jan 31, 2024

    • trained-models-simulator

      Public
      Testbed to simulate model "testing" (on self-hosted runner) to save time
      Python
      •0•0•2•0•Updated Oct 30, 2023Oct 30, 2023

    • nobrainer-zoo

      Public
      A Python CLI to execute a collection of deep learning models for brain imaging.
      Python
      •
      Other
      •7•11•2•2•Updated Oct 23, 2023Oct 23, 2023

    • pialnn-forked

      Public
      0•0•0•0•Updated Oct 14, 2023Oct 14, 2023

    • cortexode-forked

      Public
      Python
      •0•0•0•0•Updated Oct 14, 2023Oct 14, 2023

    • Branch_Setup_TM

      Public
      This is a composite action for branch and action setup used in Trained-Models repo
      MIT License
      •0•0•1•0•Updated Oct 10, 2023Oct 10, 2023

    • trained-models-template

      Public
      0•0•0•0•Updated Feb 9, 2023Feb 9, 2023

    • progressivegan3d

      Public
      WIP
      Python
      •2•4•5•7•Updated Dec 8, 2022Dec 8, 2022

    • kwyk

      Public
      Knowing what you know - Bayesian brain parcellation
      Python
      •
      Apache License 2.0
      •9•21•8•1•Updated Sep 3, 2022Sep 3, 2022

    • self-supervised

      Public
      self supervised methods for brain imaging analysis
      Jupyter Notebook
      •
      Apache License 2.0
      •1•0•0•1•Updated Jul 26, 2022Jul 26, 2022

    • neuronets.github.io

      Public
      0•0•0•0•Updated May 22, 2022May 22, 2022

    • brainy

      Public
      Automated brain segmentation
      tensorflowmrineuroimaging
      tensorflowmrineuroimagingsegmentationbrainbrain-extractiontrained-models
      Python
      •0•4•0•0•Updated May 20, 2022May 20, 2022

    • mit-brainhack2021

      Public
      JavaScript
      •9•0•0•0•Updated Dec 6, 2021Dec 6, 2021

    • Brainhack-MIT-Neuro

      Public
      Brainhack global 2021 at MIT
      2•1•5•0•Updated Dec 2, 2021Dec 2, 2021

    • ganocracy

      Public
      Training and evaluation scripts for the generation of Brain MRIs using nobrainer
      Python
      •0•0•0•0•Updated Aug 12, 2021Aug 12, 2021

    • auto-qc

      Public
      automated evaluation of quality metrics for neuroimaging data
      Apache License 2.0
      •1•1•0•0•Updated Jun 15, 2021Jun 15, 2021

    • helpdesk

      Public
      This is the Nobrainer project's helpdesk. Feel free to post any issues or discussions here.
      helpnobrainer
      helpnobrainer
      0•1•0•0•Updated Jun 11, 2021Jun 11, 2021

    • ams

      Public
      Automated meningioma segmentation
      tensorflowtumormri
      tensorflowtumormrineuroimagingsegmentationtrained-modelstumor-segmentation
      Python
      •2•6•1•0•Updated Jan 5, 2021Jan 5, 2021

    • dtrain

      Public
      Apache License 2.0
      •1•0•0•5•Updated Jan 1, 2021Jan 1, 2021

    • stylegan3d

      Public
      StyleGAN for 3D image generation
      Python
      •
      Other
      •3•14•0•0•Updated Sep 24, 2019Sep 24, 2019

    • psacnn

      Public
      Python
      •
      Other
      •2•2•0•0•Updated Sep 8, 2019Sep 8, 2019
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