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    • Python
      0100Updated Mar 2, 2026Mar 2, 2026
    • R
      0000Updated Feb 6, 2026Feb 6, 2026
    • Single-cell Transposable Element Locus Level Analysis of scRNA Sequencing
      Jupyter Notebook
      MIT License
      521200Updated Oct 28, 2025Oct 28, 2025
    • Conda recipes for the bioconda channel.
      Shell
      MIT License
      3.9k000Updated Sep 25, 2025Sep 25, 2025
    • A curated list of software packages, databases, and resources for transposable element (TE) research in genomics
      Creative Commons Zero v1.0 Universal
      0000Updated Sep 11, 2025Sep 11, 2025
    • Analysis of bulk RNA-Seq data from the Germinal Center.
      Python
      MIT License
      0000Updated Apr 21, 2025Apr 21, 2025
    • Python
      MIT License
      0000Updated Apr 21, 2025Apr 21, 2025
    • TE quantification (Telescope) pipeline for Burkitt Lymphoma bulk RNA-seq samples
      Python
      MIT License
      0000Updated Apr 21, 2025Apr 21, 2025
    • Python
      MIT License
      1000Updated Apr 21, 2025Apr 21, 2025
    • MIT License
      0000Updated Nov 20, 2024Nov 20, 2024
    • Quantify HERVs in single nucleus RNA-seq GTEx datasets using single-cell Telescope (scTelescope)
      Python
      MIT License
      0020Updated Dec 27, 2023Dec 27, 2023
    • Single cell data from Germinal Center B cell paper
      Jupyter Notebook
      MIT License
      0000Updated Dec 11, 2023Dec 11, 2023
    • The Repository to download, STAR_align, TELESCOPE and Process DE for Mets vs. Non-mets TCGA CM Bulk-RNAseq
      Jupyter Notebook
      0000Updated Oct 24, 2023Oct 24, 2023
    • What the Package Does (One Line, Title Case)
      R
      Other
      0000Updated Sep 28, 2023Sep 28, 2023
    • Bulk RNA seq analysis for responders v non-responders
      Python
      0000Updated Aug 15, 2023Aug 15, 2023
    • Transposable Element Analysis in BraIn, Single Cell, and Ubiquitous Tissues
      Creative Commons Attribution 4.0 International
      1000Updated May 24, 2023May 24, 2023
    • HTML
      0000Updated May 12, 2023May 12, 2023
    • Other
      0000Updated May 12, 2023May 12, 2023
    • General bioinformatics tips
      Creative Commons Zero v1.0 Universal
      0200Updated Mar 29, 2023Mar 29, 2023
    • HERV analysis in UM metastasis
      Python
      0000Updated Mar 27, 2023Mar 27, 2023
    • A transposable element atlas of ribo-seq data from multiple tissue types. (Project ID: PRJNA756018)
      Python
      MIT License
      0000Updated Feb 15, 2023Feb 15, 2023
    • A place to share generic "best practices" rules for the lab
      Python
      MIT License
      0000Updated Jan 27, 2023Jan 27, 2023
    • Python
      MIT License
      0000Updated Dec 24, 2022Dec 24, 2022
    • Utility functions for working with Telescope and Stellarscope data
      R
      Other
      0120Updated Sep 28, 2022Sep 28, 2022
    • Shell
      0000Updated Aug 15, 2022Aug 15, 2022
    • Simulations for testing Stellarscope
      MIT License
      0000Updated Jul 1, 2022Jul 1, 2022
    • This is the development home of the Snakemake wrapper repository, see
      Python
      212000Updated Nov 11, 2021Nov 11, 2021
    • Quantify HERVs in single-cell sequencing data
      Python
      MIT License
      0110Updated Sep 30, 2021Sep 30, 2021
    • A place to keep articles, datasets, and notes related to the development of scTELESCOPE
      GNU General Public License v3.0
      0000Updated Sep 28, 2021Sep 28, 2021
    • NCICCR

      Public
      data from national cancer institute for cancer research
      Python
      MIT License
      0000Updated Sep 28, 2021Sep 28, 2021
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