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    16 repositories

    • DreaMS

      Public
      Self-supervised learning of molecular representations from millions of tandem mass spectra using DreaMS (Nat Biotechnology)
      Jupyter Notebook
      •
      MIT License
      •44•170•7•0•Updated Apr 16, 2026Apr 16, 2026

    • EnzymeExplorer

      Public
      Highly accurate discovery of terpene synthases powered by machine learning
      Jupyter Notebook
      •
      MIT License
      •3•14•1•5•Updated Apr 14, 2026Apr 14, 2026

    • DreaMS_gradio

      Public
      Python
      •
      MIT License
      •1•2•0•0•Updated Jan 24, 2026Jan 24, 2026

    • MassSpecGym

      Public
      MassSpecGym: A benchmark for the discovery and identification of molecules (NeurIPS 2024 Spotlight)
      Jupyter Notebook
      •
      MIT License
      •16•121•4•0•Updated Nov 13, 2025Nov 13, 2025

    • DreaMS_MIMB

      Public
      Jupyter Notebook
      •
      MIT License
      •0•3•0•0•Updated Nov 5, 2025Nov 5, 2025

    • PiperFIM

      Public
      Remarkable diversity of alkaloid scaffolds in Piper fimbriulatum
      Jupyter Notebook
      •
      MIT License
      •2•3•1•1•Updated Jul 17, 2025Jul 17, 2025

    • ANN_DreaMS_benchmark

      Public
      Approximate nearest neighbors benchmark of matchms algorithms on DreaMS embeddings
      Python
      •0•5•0•0•Updated Jul 7, 2025Jul 7, 2025

    • msn_tree_library

      Public
      Jupyter Notebook
      •
      MIT License
      •6•0•0•0•Updated Nov 1, 2024Nov 1, 2024

    • ThermoRawFileParserMacLinux

      Public
      Apache License 2.0
      •0•0•0•0•Updated Sep 14, 2024Sep 14, 2024

    • Cytochromes_P450

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jul 22, 2024Jul 22, 2024

    • massive-vdbs

      Public
      Applying ultra-fast vector searches to MASSIVE mass spec data
      Python
      •0•0•0•0•Updated Jun 4, 2024Jun 4, 2024

    • DreaMS_legacy

      Public
      DreaMS (Deep Representations Empowering The Annotation of Mass Spectra)
      Jupyter Notebook
      •
      MIT License
      •2•5•0•0•Updated May 18, 2024May 18, 2024

    • pombox

      Public
      POMBOX is a GoldenGate toolkit dedicated to the fission yeast Schizosaccharomyces pombe
      HTML
      •
      MIT License
      •17k•0•0•0•Updated Aug 21, 2023Aug 21, 2023

    • TPS_mining_v1

      Public
      Older repository for the terpene synthases mining project.
      Python
      •1•0•0•0•Updated May 2, 2023May 2, 2023

    • Bioinformatic-data-collector

      Public
      Tool to get data from bioinformatic databases
      Python
      •1•0•0•0•Updated Nov 26, 2022Nov 26, 2022

    • TPSdownloader

      Public
      Fetch TPS cyclases information from various sources
      Python
      •
      MIT License
      •1•0•0•0•Updated Dec 17, 2021Dec 17, 2021
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