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    23 repositories

    • sketchlay

      Public
      SketchLay: User-Guided Force-Directed Graph Layout through Freehand Sketching
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •1•9•0•0•Updated Sep 20, 2026Sep 20, 2026

    • targetscore

      Public
      TargetScore package developed in collaboration with the Korkut lab
      HTML
      •
      Other
      •2•0•0•0•Updated Sep 18, 2026Sep 18, 2026

    • image-to-sbgn

      Public
      Convert hand-drawn SBGN maps to digital format.
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •8•4•14•43•Updated Aug 14, 2026Aug 14, 2026

    • cytoscape.js-sbgn-layout

      Public
      A cytoscape.js plugin supporting the layout of SBGN diagrams
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •2•1•3•0•Updated Aug 3, 2026Aug 3, 2026

    • sbgn-flow

      Public
      SBGNFlow — an AI-assisted and interactive workflow for generation, merging/splitting and layout of SBGN pathway maps.
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Jul 31, 2026Jul 31, 2026

    • cytoscape.js-merge-split

      Public
      An extension to merge/split graph components while respecting the existing layout
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Jul 22, 2026Jul 22, 2026

    • cytoscape.js-transform

      Public
      Apply basic transformations to graph elements
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Jul 22, 2026Jul 22, 2026

    • jobs

      Public
      Job Listing for the NLM/NCI Luna Lab
      0•0•0•0•Updated Jul 12, 2026Jul 12, 2026

    • DrugAgent

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 3, 2026Jul 3, 2026

    • python-dev

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jun 30, 2026Jun 30, 2026

    • image-to-sbgn-analysis

      Public
      Test repository to evaluate performance of MLLMs in image-to-sbgn conversion
      JavaScript
      •0•0•0•0•Updated May 28, 2026May 28, 2026

    • sbgnml-to-figure

      Public
      From SBGNML files to paper figures
      JavaScript
      •
      Creative Commons Zero v1.0 Universal
      •0•1•0•0•Updated Apr 29, 2026Apr 29, 2026

    • drGT

      Public
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Mar 11, 2026Mar 11, 2026

    • DrugAgent-v1

      Public
      A multi-agent LLM system for drug-target interaction (DTI) prediction
      Python
      •
      MIT License
      •2•1•0•0•Updated Feb 11, 2026Feb 11, 2026

    • sbgn_dataset_generator

      Public
      Generate random valid SBGN diagrams
      Python
      •
      Creative Commons Zero v1.0 Universal
      •1•0•1•0•Updated Jan 18, 2026Jan 18, 2026

    • agents.md

      Public
      Apache License 2.0
      •0•1•0•0•Updated Jan 16, 2026Jan 16, 2026

    • mcp_test

      Public
      Python
      •
      Creative Commons Zero v1.0 Universal
      •0•0•0•0•Updated Dec 25, 2025Dec 25, 2025

    • llm-text-to-knowledge-graph

      Public
      A Python package and command-line interface for extracting knowledge graphs from text, with a special focus on supporting agents working with scientific hypothe…
      Jupyter Notebook
      •
      MIT License
      •7•0•0•0•Updated Oct 22, 2025Oct 22, 2025

    • luna_matplotlib_theme

      Public
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Jul 3, 2025Jul 3, 2025

    • mturk

      Public
      Python
      •0•0•1•0•Updated Feb 14, 2025Feb 14, 2025

    • GraphPINE

      Public
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Dec 18, 2024Dec 18, 2024

    • base-python

      Public template
      Dockerfile
      •1•0•0•0•Updated Oct 28, 2024Oct 28, 2024

    • clinical-timeline-shiny

      Public
      An R/shiny widget for clinical-timeline
      R
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024
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