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@wilkinsonlab Wilkinson Laboratory for Biological Informatics

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    49 repositories

    • Community-FAIR-Tests

      Public
      A repository for the code and metadata for domain-specific or DO-specific FAIR tests
      Ruby
      •
      MIT License
      •1•0•3•0•Updated Apr 2, 2026Apr 2, 2026

    • FAIR-Core-Tests

      Public
      Core tests of FAIRness intended to be used by anyone. Follows the API defined by the OSTrails project
      Ruby
      •
      MIT License
      •1•0•7•0•Updated Apr 1, 2026Apr 1, 2026

    • NMDO-Sprints-Documentation

      Public
      1•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • Sextans-Suite

      Public
      Ruby
      •
      Apache License 2.0
      •1•0•0•0•Updated Mar 31, 2026Mar 31, 2026

    • forked-ostrails-docs

      Public
      OSTrails RTD Documentation
      Other
      •14•0•0•0•Updated Mar 16, 2026Mar 16, 2026

    • neuromuscular-disease-ontology

      Public
      Makefile
      •1•0•0•0•Updated Feb 25, 2026Feb 25, 2026

    • FLAIR-GG

      Public
      Code for the FLAIR-GG
      Jupyter Notebook
      •
      MIT License
      •2•0•0•0•Updated Feb 5, 2026Feb 5, 2026

    • shallot-light

      Public
      even lighter than shallot, which is lighter than grlc
      Ruby
      •
      MIT License
      •0•0•0•0•Updated Jan 28, 2026Jan 28, 2026

    • FLAIR-GG-Analytics

      Public
      Jupyter Lite Space for Analytics from the FLAIR-GG project outputs
      Jupyter Notebook
      •0•0•0•0•Updated Sep 29, 2025Sep 29, 2025

    • multi-crop-passport-descriptor-ontology

      Public
      Resurrected! Archived repository hosting the FAO-IPGRI multi-crop passport descriptor ontology
      Creative Commons Attribution 4.0 International
      •3•0•0•0•Updated Jul 4, 2025Jul 4, 2025

    • odrl-translator-demo

      Public
      TypeScript
      •
      Apache License 2.0
      •0•0•0•0•Updated Feb 20, 2025Feb 20, 2025

    • foops_documentation_scripts

      Public
      Repository used to generate the JSON-LD and HTML catalogs for FOOPS!
      HTML
      •
      Apache License 2.0
      •2•0•0•0•Updated Dec 2, 2024Dec 2, 2024

    • FAIRDataPoint

      Public
      Java
      •
      MIT License
      •39•0•0•0•Updated Sep 18, 2024Sep 18, 2024

    • odrl-cce-profile

      Public
      ODRL Profile that adds new terms to support Common Conditions of use Elements
      Ruby
      •
      MIT License
      •0•0•0•0•Updated Jun 13, 2024Jun 13, 2024

    • odrl-negotiator

      Public
      Find matches between ODRL offers and requests
      MIT License
      •0•0•0•0•Updated Mar 18, 2024Mar 18, 2024

    • odrl-cce-models

      Public
      0•0•0•0•Updated Feb 28, 2024Feb 28, 2024

    • Field-Book

      Public
      Java
      •
      GNU General Public License v2.0
      •66•0•0•0•Updated Feb 7, 2024Feb 7, 2024

    • FAIRDataPoint-client

      Public
      FAIR Data Point Client application for browsing the metadata and administration.
      Vue
      •
      MIT License
      •12•0•0•0•Updated Jan 9, 2024Jan 9, 2024

    • MIAPPE

      Public
      Minimum Information About a Plant Phenotyping Experiment
      HTML
      •
      Other
      •10•0•0•0•Updated Sep 21, 2023Sep 21, 2023

    • MIAPPE-ontology

      Public
      Modelling of MIAPPE
      3•0•0•0•Updated Jan 5, 2023Jan 5, 2023

    • FAIR_SPARQL_Indexing

      Public
      A repository for the indexing code and the SHACL descriptors for SPARQL endpoints
      MIT License
      •0•0•0•0•Updated Feb 8, 2021Feb 8, 2021

    • swan-ontology

      Public
      ARCHIVE: SWAN Ontology 2.0 (from Google Code)
      Apache License 2.0
      •1•0•0•0•Updated Sep 11, 2020Sep 11, 2020

    • epigenomics_pipeline

      Public
      Epigenomics workflow system for the semi-automated analysis of NGS data
      jupyterdocker-imagedata-analysis
      jupyterdocker-imagedata-analysischip-seqgalaxynotebooksrna-seq-datadocker-commandsepigenomics-workflowbrassica-rapa
      Jupyter Notebook
      •
      MIT License
      •1•3•0•0•Updated Feb 27, 2020Feb 27, 2020

    • galaxy_tools

      Public
      MIT License
      •1•0•0•0•Updated Feb 12, 2020Feb 12, 2020

    • Client.js

      Public
      [DEPRECATED] A JavaScript client for Triple Pattern Fragments interfaces.
      JavaScript
      •
      Other
      •35•0•0•0•Updated Feb 5, 2020Feb 5, 2020

    • ORCA-X

      Public
      Extensions to the ORCA Ontology related to the Certainty Evaluation project
      The Unlicense
      •0•0•0•0•Updated Nov 29, 2019Nov 29, 2019

    • robust-clustering-metagenomics

      Public
      R
      •0•4•0•0•Updated Jul 16, 2019Jul 16, 2019

    • FAIR-data-maturity-model-WG

      Public
      https://www.rd-alliance.org/group/fair-data-maturity-model-wg/case-statement/fair-data-maturity-model-wg-case-statement
      3•0•0•0•Updated Feb 20, 2019Feb 20, 2019

    • FAIR_Evaluator_Client

      Public
      Python client to the FAIR Metrics Evaluator REST interface
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 19, 2018Jul 19, 2018

    • openapi

      Public
      Gem to build API wrapper
      Ruby
      •
      MIT License
      •1•0•0•0•Updated Feb 2, 2018Feb 2, 2018
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