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pair-analysis

In this repository, I have uploaded my method of detecting the stacking fault in a binary alloys system in MD (Molecular Dynamics) simulations.

This method is based on counting the number of asymmetric bond for each atom (A-B & B-A) and assigning it as a "Pair" parameter. And by analyzing this the distribution of the pair parameter of the nearest neighbors, I was able to detect the different stacking fault in the superlattice.

My specific implementation is about detecting the different stacking fault in the L12 superlattice system. By applying this method, I was able to identify three different kinds of stacking faults in a compression test of rounded edges Wulff shape nanoparticles from an MD simulation.

The distribution of the pair parameter for each stacking fault type for B3A L12 alloy:

Fault Type Structure Type Particle type Pair Parameter Distribution of the Nighbor Pair Parameter [Particle type: Pair Parameter - Count of Each Type]
1: Anti-Phase Boundaries (ABP) FCC (1) A 11 A:11 - 1 ; B:3 - 2 ; B:4 - 9
1: Anti-Phase Boundaries (ABP) FCC (1) B 3 A:11 - 2 ; A:12 - 2 ; B:3 - 1 ; B:4 - 8
1: Anti-Phase Boundariess (ABP) FCC (1) B 4 A:11 - 3 ; A:12 - 2 ; B:3 - 3 ; B:4 - 5
2: Complex Stacking Faults (CSF) HCP (2) A 11 -
2: Complex Stacking Faults (CSF) HCP (2) B 3 A:11 - >1; B:4 - >4
2: Complex Stacking Faults (CSF) HCP (2) B 4 A:11 - >1; B:3 - >2; B:4 - >2
3: Super-Intrinsic Stacking Faults (SISF) HCP(2) A 12 -
3: Super-Intrinsic Stacking Faultss (SISF) HCP(2) B 4 A:12 - >1; B:4 - >4

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