Provide MMDB Shim built on gemmi - #385

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Dialpuri wants to merge 24 commits into

pemsley:mainfrom

Dialpuri:mock-mmdb

Commits on Jul 15, 2026

Added start of command retrieval with natural language
Dialpuri
committed
8063184
Added Coot Assistant Alpha
Dialpuri
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bb3ba04
Added Coot Assistant Alpha
Dialpuri
committed
7e24858

Commits on Jul 21, 2026

Added shim files
Dialpuri
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28ad048
Updated source code and MMDB implementation
Dialpuri
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fff4975
Added other shims to make Coot compile
Dialpuri
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8404c0c

Commits on Jul 22, 2026

Updated stubbed functions and formatted implementations
Dialpuri
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eaeee7a
Updated stubbed functions and formatted implementations
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9183e17
Fixed bug with null chains
Dialpuri
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4bc24bb
Updated implementation
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de11b7f
Added infrastructure for safer deletion
Dialpuri
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67e3c20
Fixed bugs with implementation
Dialpuri
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979c23b
Create alternate to MMDBAtom_list in clipper
Dialpuri
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8be3101
Fix issue with numeric CID defaulting to model
Dialpuri
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412be75
Fix bug with stale owner
Dialpuri
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5a59657

Commits on Jul 23, 2026

Split up implementation and added architecture.md
Dialpuri
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265f85d
CI only on master
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fbb466f
Add filter to test-molecules-container
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4470831
Add audit test to mmdb-shim
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46b25b9
Merge remote-tracking branch 'upstream/main' into mock-mmdb
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3f7b96f
Change new files to use shims
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3f29fb6
untrack coot assistant files
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f5ad3aa
Removed Coot Assistant infrastructure from this branch
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dd7ace4
Remove unnecessary files
Dialpuri
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f90672a