I’m designing models and algorithms for sequencing (NGS & TGS) data.
- Rennes, France
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07:19
(UTC -12:00) - http://people.rennes.inria.fr/Pierre.Peterlongo/
- @pierrepeterlongo.bsky.social
Highlights
- Pro
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kmer2sequences
kmer2sequences PublicGiven a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
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quasi_dictionary
quasi_dictionary PublicData structure indexing key-values with controled false positive rate and with low time and memory impacts
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logan_blaster
logan_blaster PublicGiven either a kmviz id (obtained from a Logan-Search query) or a query (fasta sequence), and a file containing a list of SRA accessions (provided or not by Logan-Search results) run a local blast …
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