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Mark whether the MHC identity was reported or inferred: serotypes mix primary and derived data

Status: Open.

#458 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Three studies curate a cell line or pathogen the deposit contradicts (#436 pattern)

Status: Open.

#457 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Retired allele designations stay unresolved: parse() runs with use_allele_aliases=False

Status: Open.

#456 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Serotype map misses 9 alleles: mhcgnomes' table mixes key formats, lookup handles only one

Status: Open.

#455 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Only pmid_overrides.yaml and condition_vocabulary.yaml reject duplicate YAML keys

Status: Open.

#454 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Lorente 2019 (PMID 31530632) curates 2 of its 5 MS-profiled arms

Status: Open.

#452 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Class-pool path leaves ungrouped rows blank instead of pmid_ambiguous, discarding consensus metadata

Status: Open.

#451 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Flat experimental-condition columns on samples, observations and training rows

Status: Open.

#450 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Make the serotype query normalizer public (_normalize_serotype_query)

Status: Open.

#449 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

Expose a public, quiet cache-validity check for observations + peptide_mappings

Status: Open.

#448 In pirl-unc/hitlist;

· iskandr opened on Sep 9, 2026

exclude_from_ms is documented and curated on 11 studies but read by nothing — 40,355 non-MS rows are in the observations corpus

Status: Open.

#444 In pirl-unc/hitlist;

· iskandr opened on Sep 8, 2026

test.sh worker sizing counts inactive pages, letting ./deploy.sh thrash for hours

Status: Open.

#440 In pirl-unc/hitlist;

· iskandr opened on Sep 8, 2026