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Installation small fixes #22

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Installation small fixes #22

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a26952c
Update setup_env.sh
roman-bushuiev Oct 27, 2024
51d86db
Update README.md
roman-bushuiev Oct 27, 2024
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -87,7 +87,7 @@ git clone https://github.com/pluskal-lab/TerpeneMiner.git
cd TerpeneMiner
. scripts/setup_env.sh
conda activate terpene_miner
pip install .
pip install -e .
```
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2 changes: 2 additions & 0 deletions scripts/setup_env.sh
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Expand Up @@ -19,6 +19,7 @@ pip install plotly
pip install fair-esm==2.0.0
pip install ankh==1.10.0
pip install tables
pip install h5py
pip install tqdm
pip install py-mcc-f1
pip install inquirer
Expand All @@ -39,5 +40,6 @@ fi
git clone https://github.com/tttianhao/CLEAN.git
cd CLEAN/app/src
echo "export PATH=\$PATH:$(pwd)" >> ~/.bashrc
echo "export PYTHONPATH=\$PYTHONPATH:$(pwd)" >> ~/.bashrc
source ~/.bashrc
cd $cwd