Rich evaluations on new data with atomic diffs#35

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SamusRam wants to merge 41 commits intomainfrom

feature/port-cleaning-filters

Commits on Mar 24, 2026

Commits on Mar 28, 2026

Commits on Apr 2, 2026

fix: exclude prenyltransferases from per-type TPS detection
SamusRam
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docs: restructure validation protocol with five-track design
SamusRam
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feat: add evaluation, analysis, and model variant scripts
SamusRam
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feat: add configs for Track E, cross-track, and model variants
SamusRam
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data: add Track E dataset, extended EC mapping, and updated main dataset
SamusRam
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docs: remove CLEANBetterDetection, keep only CLEANEcDetection variant
SamusRam
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docs: add figure PNGs referenced by local_validation_protocol.md
SamusRam
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Commits on Apr 7, 2026

Commits on Apr 11, 2026

Commits on Apr 12, 2026

docs: update Blastp metrics after e-value confidence fix
SamusRam
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Commits on Apr 13, 2026

fix: re-run Blastp/Foldseek with e_threshold=0.1, update heatmap color range to 0-1
SamusRam
committed