Nucleus: A Tool for Bioinformaticians.

Just as software developers have Visual Studio Code, bioinformaticians now have Nucleus.

Nucleus is designed to simplify bioinformatics workflows by integrating powerful language models with essential bioinformatics tools.

Installation

pip install nucleus-bio

Getting Started

# Navigate to your desired project directory. 
cd /to/your/project

# Nucleus currently supports OpenAI and Anthropic models.

# Use OpenAI 4o on your files
nucleus --model openai --openai-api-key your-key-goes-here

# Use Claude 3.5 Sonnet on your files
aider --model sonnet --anthropic-api-key your-key-goes-here

Refer to usage documentation for more details.

Features

• Ask for queries related to bioinformatic tools and commands.

Upcoming Features

• Integration of BioWASM tools to eliminate the need for local installation of bioinformatics software.
• Visualizae bioinformatics file formats.
• Search and download bioinformatics datasets directly.