Scientific Reports 14.1 (2024): 3731
Communications Biology 7.1 (2024): 1117

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subjects list

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Importing the Anaconda virtual environment package to run Jupyter notebook.

conda env create -f GP.yaml

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Behav_data

Extracting basic regressors

• Behavior.regressor.ipynb

1. Creating reward-modulated regressors (AM2):

   • mk.regressor.reward.py -h

2. Creating cursor length-modulated regressors (AM2):

   • mk.regressor.cursor_length.py -h

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fMRI_data

Making a group full mask

• mk.mask.group.zsh -f fraction (default=0.7)

1st level analysis

GLM

1. Move-Stop:

   • GLM.move-stop.SSKim.tcsh subject

2. Reward:

   • GLM.reward_per_trial.shifted.zsh -s subject -t time_shift (default=0s) -c condition (default='On')
   • 3dttest++.reward_per_trial.shifted.zsh -t time_shift (default=0s)
   • extract.Rew#1_Coef.shifted.zsh -s subject -t time_shift (default=0s) -c condition (default='On')

3. Cursor Length:

   • GLM.cursor_length_per_trial.shifted.zsh -s subject -t time_shift (default=0s) -c condition (default='main')
   • 3dttest++.cursor_length_per_trial.shifted.zsh -t time_shift (default=0s)

Extracting a BOLD signal from a voxel which has maximux beta value

• 3dTproject.zsh -s subject --pb source_file (default=pb02)
• 3dExtrema.zsh -s subject -a area -R ROI --pb source_file (default=pb02)