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arnavaz edited this page Jun 18, 2018
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5 revisions
VisCapCancer is a tool to infer somatic copy number alterations in tumours from targeted sequencing data.
Method: VisCap calculates the fraction of overall sequence coverage assigned to genomic intervals and computes log2 ratios for tumours with respect to a panel of normals. Candidate somatic CNVs are called when log2 ratios exceed user-defined thresholds.