respect spec000, add oldest & dev testing

.github/workflows/build_docs.yml

@@ -12,20 +12,20 @@
      strategy:
        matrix:
          os: ['ubuntu-latest']
-         environment-file: [ci/312.yml]
+         environment-file: [ci/314-latest.yaml]
          experimental: [false]
      defaults:
        run:
          shell: bash -l {0}
 
      steps:
        - name: Checkout repo
-         uses: actions/checkout@v4
+         uses: actions/checkout@v6
          with:
            fetch-depth: 0 # Fetch all history for all branches and tags.
 
        - name: Setup micromamba
-         uses: mamba-org/setup-micromamba@v1
+         uses: mamba-org/setup-micromamba@v3
          with:
            environment-file: ${{ matrix.environment-file }}
            micromamba-version: 'latest'
@@ -54,4 +54,4 @@
             branch: gh-pages
             directory: gh-pages
             github_token: ${{ secrets.GITHUB_TOKEN }}
-            force: true
+            force: true

.github/workflows/unittests.yml

@@ -2,11 +2,10 @@
 
  on:
    push:
-     branches:
-     - '*'
+     branches: [main]
    pull_request:
      branches:
-     - '*'
+       - '*'
    schedule:
      - cron: '59 23 * * *'
    workflow_dispatch:
@@ -25,16 +24,18 @@
        matrix:
          os: [ubuntu-latest]
          environment-file: [
-            ci/312.yml,
-            ci/313.yml,
-            ci/314.yml,
+            ci/312-oldest.yaml,
+            ci/312-latest.yaml,
+            ci/313-latest.yaml,
+            ci/314-latest.yaml,
+            ci/314-dev.yaml,
          ]
          include:
-           - environment-file: ci/314.yml
+           - environment-file: ci/314-latest.yaml
              os: macos-15-intel # Intel
-           - environment-file: ci/314.yml
+           - environment-file: ci/314-latest.yaml
              os: macos-latest # Apple Silicon
-           - environment-file: ci/314.yml
+           - environment-file: ci/314-latest.yaml
              os: windows-latest
        fail-fast: false
 
@@ -49,7 +50,7 @@
            fetch-depth: 0 # Fetch all history for all branches and tags.
 
        - name: setup micromamba
-         uses: mamba-org/setup-micromamba@v2
+         uses: mamba-org/setup-micromamba@v3
          with:
            environment-file: ${{ matrix.environment-file }}
            micromamba-version: 'latest'
@@ -77,18 +78,8 @@
            --cov-report xml
 
        - name: codecov
-         uses: codecov/codecov-action@v5
+         uses: codecov/codecov-action@v6
          with:
            token: ${{ secrets.CODECOV_TOKEN }}
            file: ./coverage.xml
            name: segregation-codecov
-
-       - name: Generate and publish the report
-         if: |
-           failure()
-           && steps.status.outcome == 'failure'
-           && github.event_name == 'schedule'
-           && github.repository_owner == 'pysal'
-         uses: xarray-contrib/issue-from-pytest-log@v1
-         with:
-           log-path: pytest-log.jsonl

.github/workflows/upload_package.yml

@@ -23,10 +23,10 @@ jobs:
 
     steps:
       - name: Checkout repo
-        uses: actions/checkout@v3
+        uses: actions/checkout@v6
 
       - name: Set up python
-        uses: actions/setup-python@v4
+        uses: actions/setup-python@v6
         with:
           python-version: "3.x"
 

ci/314.yml → ci/312-latest.yaml

@@ -2,23 +2,23 @@ name: test
 channels:
   - conda-forge
 dependencies:
-  - python=3.14
-  - geopandas>=0.9
+  - python=3.12
+  - geopandas
   - joblib
   - libpysal
   - mapclassify
   - matplotlib
+  - numba
   - numpy
   - pandarm
   - pandas
   - pip
+  - pyproj
   - quilt3
   - scikit-learn
   - scipy
   - seaborn
   - tqdm
-  - numba
-  - pyproj >=3
 
   # testing, etc
   - codecov
@@ -27,4 +27,3 @@ dependencies:
   - pytest-cov
   - pytest-xdist
   - twine
-

ci/312-oldest.yaml

@@ -0,0 +1,29 @@
+name: test
+channels:
+  - conda-forge
+dependencies:
+  - python=3.12
+  - geopandas=1.1.0
+  - joblib=1.5.0
+  - libpysal=4.12.1
+  - mapclassify=2.8
+  - matplotlib=3.10
+  - numba=0.60
+  - numpy=2.0.0
+  - pandarm
+  - pandas=2.3.0
+  - pip
+  - pyproj
+  - quilt3
+  - scikit-learn=1.5.0
+  - scipy=1.14.0
+  - seaborn
+  - tqdm
+
+  # testing, etc
+  - codecov
+  - pytest
+  - pytest-mpl
+  - pytest-cov
+  - pytest-xdist
+  - twine

ci/313.yml → ci/313-latest.yaml

@@ -3,22 +3,22 @@ channels:
   - conda-forge
 dependencies:
   - python=3.13
-  - geopandas>=0.9
+  - geopandas
   - joblib
   - libpysal
   - mapclassify
   - matplotlib
+  - numba
   - numpy
   - pandarm
   - pandas
   - pip
+  - pyproj
   - quilt3
   - scikit-learn
   - scipy
   - seaborn
   - tqdm
-  - numba
-  - pyproj >=3
 
   # testing, etc
   - codecov

ci/314-dev.yaml

@@ -0,0 +1,36 @@
+name: test
+channels:
+  - conda-forge
+dependencies:
+  - python=3.14
+  - pandarm
+  - pip
+  - numba
+
+  # testing, etc
+  - codecov
+  - pytest
+  - pytest-mpl
+  - pytest-cov
+  - pytest-xdist
+  - twine
+
+  - pip:
+    # dev versions of packages
+    - --pre \
+      --index-url https://pypi.anaconda.org/scientific-python-nightly-wheels/simple  \
+      --extra-index-url https://pypi.org/simple
+    - joblib
+    - matplotlib
+    - numpy
+    - pandas
+    - pyproj
+    - quilt3
+    - scikit-learn
+    - scipy
+    - seaborn
+    - statsmodels
+    - tqdm
+    - git+https://github.com/geopandas/geopandas.git@main
+    - git+https://github.com/pysal/libpysal.git
+    - git+https://github.com/pysal/mapclassify.git

ci/312.yml → ci/314-latest.yaml

@@ -2,23 +2,23 @@ name: test
 channels:
   - conda-forge
 dependencies:
-  - python=3.12
-  - geopandas>=0.9
+  - python=3.14
+  - geopandas
   - joblib
   - libpysal
   - mapclassify
   - matplotlib
+  - numba
   - numpy
   - pandarm
   - pandas
   - pip
+  - pyproj
   - quilt3
   - scikit-learn
   - scipy
   - seaborn
   - tqdm
-  - numba
-  - pyproj >=3
 
   # testing, etc
   - codecov
@@ -38,5 +38,4 @@ dependencies:
   - sphinx-gallery
   - sphinxcontrib-bibtex
   - sphinx_bootstrap_theme
-  - watermark
-  - black
+  - watermark

environment.yml

@@ -2,19 +2,19 @@ name: segregation
 channels:
   - conda-forge
 dependencies:
-  - python>=3.12
-  - geopandas>=0.9
+  - python
+  - geopandas
   - joblib
   - libpysal
   - mapclassify
   - matplotlib
+  - numba
   - numpy
   - pandarm
   - pandas
   - pip
+  - pyproj >=3
   - scikit-learn
   - scipy
   - seaborn
-  - tqdm
-  - numba
-  - pyproj >=3
+  - tqdm

pyproject.toml

@@ -29,19 +29,19 @@ classifiers = [
 ]
 requires-python = ">=3.12"
 dependencies = [
-    "geopandas>=0.9",
-    "joblib",
-    "libpysal",
-    "mapclassify",
-    "matplotlib",
-    "numpy",
-    "pandas",
-    "scikit-learn>=0.21.3",
-    "scipy",
+    "geopandas>=1.1.0",
+    "joblib>=1.5.0",
+    "libpysal>=4.12.1",
+    "mapclassify>=2.8",
+    "matplotlib>=3.10",
+    "numba>=0.60",
+    "numpy>=2.0.0",
+    "pandas>=2.3.0",
+    "pyproj>=3",
+    "scikit-learn>=1.5.0",
+    "scipy>=1.14.0",
     "seaborn",
     "tqdm",
-    "numba",
-    "pyproj>=3"
 ]
 
 [project.urls]