GitHub - rachclark/RestingState: scripts for the processing of resting state images (MRI)

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 56 Commits
Octave		Octave
ROIs		ROIs
T1warp_half_strength		T1warp_half_strength
BamHippo_c2_2.3L.func.gii		BamHippo_c2_2.3L.func.gii
BamHippo_c2_2.3R.func.gii		BamHippo_c2_2.3R.func.gii
BatchSubs.sh		BatchSubs.sh
ICA_denoise.sh		ICA_denoise.sh
ICA_gui.fig		ICA_gui.fig
ICA_gui.m		ICA_gui.m
P1_touchup.sh		P1_touchup.sh
PlotPow.sh		PlotPow.sh
WarpFixer.sc		WarpFixer.sc
dataPrep.sh		dataPrep.sh
directory structure.odp		directory structure.odp
directory_structure.txt		directory_structure.txt
dummy_melodic.fsf		dummy_melodic.fsf
dummy_nuisance.fsf		dummy_nuisance.fsf
dummy_nuisance_classic_aroma.fsf		dummy_nuisance_classic_aroma.fsf
dummy_nuisance_classic_aroma_regFix.fsf		dummy_nuisance_classic_aroma_regFix.fsf
dummy_nuisance_compcor.fsf		dummy_nuisance_compcor.fsf
dummy_nuisance_compcor_regFix.fsf		dummy_nuisance_compcor_regFix.fsf
dummy_nuisance_compcor_wGMR.fsf		dummy_nuisance_compcor_wGMR.fsf
dummy_nuisance_compcor_wGMR_regFix.fsf		dummy_nuisance_compcor_wGMR_regFix.fsf
dummy_nuisance_compcor_wGMRv1.fsf		dummy_nuisance_compcor_wGMRv1.fsf
dummy_nuisance_compcor_wGMRv1_regFix.fsf		dummy_nuisance_compcor_wGMRv1_regFix.fsf
dummy_nuisance_lesion.fsf		dummy_nuisance_lesion.fsf
dummy_nuisance_lesion_regFix.fsf		dummy_nuisance_lesion_regFix.fsf
dummy_nuisance_noglobal.fsf		dummy_nuisance_noglobal.fsf
dummy_nuisance_noglobal_lesion.fsf		dummy_nuisance_noglobal_lesion.fsf
dummy_nuisance_noglobal_lesion_regFix.fsf		dummy_nuisance_noglobal_lesion_regFix.fsf
dummy_nuisance_noglobal_regFix.fsf		dummy_nuisance_noglobal_regFix.fsf
dummy_nuisance_regFix.fsf		dummy_nuisance_regFix.fsf
dummy_preproc.fsf		dummy_preproc.fsf
dwell_Matlab_test_Code.txt		dwell_Matlab_test_Code.txt
fdDvars.sh		fdDvars.sh
fd_dvars.m		fd_dvars.m
firstlevelseeding_parallel.m		firstlevelseeding_parallel.m
fslreorient.sh		fslreorient.sh
getpvals.m		getpvals.m
getroicorrs.m		getroicorrs.m
makeROI.sh		makeROI.sh
makeROI_Noise.sh		makeROI_Noise.sh
makeROI_batch.sh		makeROI_batch.sh
master_Reproc.sh		master_Reproc.sh
master_Reproc_chord.sh		master_Reproc_chord.sh
master_Reproc_lesion.sh		master_Reproc_lesion.sh
motionScrub.sh		motionScrub.sh
motionscrub.m		motionscrub.m
netclustering.m		netclustering.m
new_multisub_seedVoxel_Correlation.sh		new_multisub_seedVoxel_Correlation.sh
normseedregressors.m		normseedregressors.m
nuisance_noglobal.txt		nuisance_noglobal.txt
processRestingState.sh		processRestingState.sh
qualityCheck.sh		qualityCheck.sh
removeNuisanceRegressor.sh		removeNuisanceRegressor.sh
reproc_2016.sh		reproc_2016.sh
reprocess_without_global		reprocess_without_global
restingStateMelodic.sh		restingStateMelodic.sh
restingStatePreprocess.sh		restingStatePreprocess.sh
runICAgui.sh		runICAgui.sh
run_getroicorrs.m		run_getroicorrs.m
run_ica.m		run_ica.m
run_seedregistrationcheck.m		run_seedregistrationcheck.m
scriptFlags_Key.xlsx		scriptFlags_Key.xlsx
sd.sh		sd.sh
seedVoxelCorrelation.sh		seedVoxelCorrelation.sh
seedVoxelCorrelation_orig.sh		seedVoxelCorrelation_orig.sh
seedVoxelCorrelation_test.sh		seedVoxelCorrelation_test.sh
seedregistrationcheck.m		seedregistrationcheck.m
sutterer_local_reproc_output.txt		sutterer_local_reproc_output.txt
test.sh		test.sh
variable_dictionary.txt		variable_dictionary.txt