baboon_ASE

This repository contains the code that used to process the baboon dataset for the ASE analysis.

Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
D1.combine_all_gatk_counts_into_single_file.ipynb		D1.combine_all_gatk_counts_into_single_file.ipynb
D10.add_whatshap_phasing_data_to_ase.ipynb		D10.add_whatshap_phasing_data_to_ase.ipynb
D11.Lifeover_baboon_to_human_positions.ipynb		D11.Lifeover_baboon_to_human_positions.ipynb
D2.add_annt_and_phase_data_to_gatk_concatenated_table.ipynb		D2.add_annt_and_phase_data_to_gatk_concatenated_table.ipynb
D3.convert_single_to_multiline data.ipynb		D3.convert_single_to_multiline data.ipynb
D4.drop_duplicates_of_concat_annt_file.ipynb		D4.drop_duplicates_of_concat_annt_file.ipynb
D5.add_phaseExtender_phase_dupes_dropped_table.ipynb		D5.add_phaseExtender_phase_dupes_dropped_table.ipynb
D6.Fetch_ensembl_IDs_using_gprofiler.ipynb		D6.Fetch_ensembl_IDs_using_gprofiler.ipynb
D7.add_TPM_data_to_rna_AI_table.ipynb		D7.add_TPM_data_to_rna_AI_table.ipynb
D8.add_exon_id_to_AI_table.ipynb		D8.add_exon_id_to_AI_table.ipynb
D9.concat_vcfs_to_a_table_file.ipynb		D9.concat_vcfs_to_a_table_file.ipynb
README.md		README.md

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