An template project structure for a research data pipeline built using the Nextflow workflow management system and organised following the nf-core guidelines. It provides a structured approach to developing reproducible and scalable bioinformatics pipelines.
Please read the Nextflow installation instructions to install Java and Nextflow.
It's recommended to set up your development environment also.
To run the Nextflow workflow, use the following command:
nextflow run main.nfMake sure to adjust any parameters in the configuration files as needed for your specific use case.
Other references include:
- University of Sheffield, Stanage Nextflow notes
- Sheffield Bioinformatics Core Bioinformatics pipelines
Contributions to this project are welcome. Please follow the guidelines outlined in the contribution guide.