Issues

• Add noise signal filter to clean MS2 spectra

  enhancement
  rformassspectrometry/Spectra#390 · Filter by author jorainer opened on Oct 22, 2026
  2

  

• MsBackendMzR reading is 100×+ slower under the default SnowParam backend (esp. Windows)

  rformassspectrometry/Spectra#387 · Filter by author stanstrup opened on Jun 5, 2026
  1

• Error precursor read by Spectra

  rformassspectrometry/Spectra#385 · Filter by author MuyaoXi9271 opened on Apr 23, 2026
  12

• BiocParallel errors

  rformassspectrometry/Spectra#374 · Filter by author jonlbl opened on Dec 3, 2025
  4

• Question about APIs for a new complex format backend

  rformassspectrometry/Spectra#373 · Filter by author mobiusklein opened on Nov 21, 2025
  3

• Improve performance of filterPeaksRanges

  Performance
  rformassspectrometry/Spectra#369 · Filter by author jorainer opened on Oct 8, 2025
  1

• isotope pattern for MS/MS precursor

  rformassspectrometry/Spectra#357 · Filter by author cbroeckl opened on May 5, 2025
  8

• Keep old plotting parameters

  rformassspectrometry/Spectra#356 · Filter by author lgatto opened on Apr 7, 2025

• Mirror and overlay plot support for variable modifications

  rformassspectrometry/Spectra#347 · Filter by author lgatto opened on Jan 22, 2025
  1

• Improve Spectra::plotSpectra and PSMatch::addFragments

  rformassspectrometry/Spectra#346 · Filter by author guideflandre opened on Jan 21, 2025
  2

• Check and fix backends for the new Spectra version

  rformassspectrometry/Spectra#333 · Filter by author jorainer opened on Sep 27, 2024
  1

• Interpretation of matchSpectra() and plotting results of plotSpectraMirror()

  rformassspectrometry/Spectra#327 · Filter by author v-v1150n opened on Jul 18, 2024

• adduct type

  rformassspectrometry/Spectra#324 · Filter by author cbroeckl opened on May 22, 2024
  1

• MS-imaging support / MsBackendImzML

  rformassspectrometry/Spectra#322 · Filter by author RogerGinBer opened on May 17, 2024
  3

• Fix is.vector()

  rformassspectrometry/Spectra#318 · Filter by author lgatto opened on Mar 26, 2024
  3

• Problem with Waters raw file

  rformassspectrometry/Spectra#310 · Filter by author sardnar opened on Feb 11, 2024
  2

• Ensure all methods working on peaksData use the chunk-wise processing

  rformassspectrometry/Spectra#307 · Filter by author jorainer opened on Nov 24, 2023
  

• New feature: group and summarised Spectra

  rformassspectrometry/Spectra#295 · Filter by author lgatto opened on Jun 13, 2023
  2

• API CHANGE: support peaksData to return data.frame or matrix

  API
  rformassspectrometry/Spectra#289 · Filter by author jorainer opened on May 22, 2023
  11

• Function to find/visualise contaminants

  rformassspectrometry/Spectra#260 · Filter by author lgatto opened on Dec 26, 2022
  2

• pickPeaks fails to centroid if no flanking zeroes are present

  rformassspectrometry/Spectra#257 · Filter by author RogerGinBer opened on Dec 21, 2022
  4

• filterPrecursorMzRange

  rformassspectrometry/Spectra#256 · Filter by author cbroeckl opened on Dec 16, 2022
  2

• Discussion: spectraData,spectraData<- to support also data.frame or other two-dimensional data structues

  rformassspectrometry/Spectra#248 · Filter by author jorainer opened on Oct 19, 2022

• compareSpectra limits using joinPeaksGnps

  rformassspectrometry/Spectra#239 · Filter by author LiesaSalzer opened on Feb 28, 2022
  4

• Down-sampling spectra

  rformassspectrometry/Spectra#234 · Filter by author cutleraging opened on Jan 29, 2022
  3