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@rivas-lab

Rivas Lab

Source code and tools for projects in the lab

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  1. covid19 covid19 Public

    As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

    Jupyter Notebook 44 7

  2. public-resources public-resources Public

    Repository for resources we'd like to share with the community.

    Jupyter Notebook 25 11

  3. snpnet snpnet Public

    snpnet - Efficient Lasso Solver for Large-scale genetic variant data

    R 20 3

  4. Smiles2Dock Smiles2Dock Public

    Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking (NeurIPS 2025 AI for Science Workshop)

    Python 9

  5. mvpmm mvpmm Public

    MultiVariate Polygenic Mixture Model

    R 7 3

  6. FasTag FasTag Public

    FasTag: automatic text classification of unstructured medical narratives

    Jupyter Notebook 6 2

Repositories

Showing 10 of 39 repositories
  • Smiles2Dock Public

    Smiles2Dock: an open large-scale multi-task dataset for ML-based molecular docking (NeurIPS 2025 AI for Science Workshop)

    rivas-lab/Smiles2Dock’s past year of commit activity
    Python 9 Apache-2.0 0 0 0 Updated Nov 16, 2025
  • waveform_disease Public

    processing waveform data + predicting disease phenotypes

    rivas-lab/waveform_disease’s past year of commit activity
    Python 1 0 0 0 Updated Nov 16, 2025
  • AncestryOmicsUKB Public

    Using Pre-training and Interaction Modeling for ancestry-specific disease prediction in UK Biobank (PLOS One)

    rivas-lab/AncestryOmicsUKB’s past year of commit activity
    R 0 0 0 0 Updated Oct 16, 2025
  • phenome-wide-unified-model Public
    rivas-lab/phenome-wide-unified-model’s past year of commit activity
    Python 0 0 0 0 Updated Sep 18, 2025
  • sh-phewas Public

    PheWAS on a sphere. Dashboard for spherical harmonic regression on PheWAS data.

    rivas-lab/sh-phewas’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 26, 2025
  • umr-visualizer Public

    Python visualization package for unified meta-regression models

    rivas-lab/umr-visualizer’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Mar 31, 2025
  • mrp Public

    Repo for MRP method.

    rivas-lab/mrp’s past year of commit activity
    Python 3 1 2 2 Updated Jul 24, 2024
  • biomarkers Public
    rivas-lab/biomarkers’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated May 23, 2024
  • multiomics-ukb Public
    rivas-lab/multiomics-ukb’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 11, 2024
  • snpnet Public

    snpnet - Efficient Lasso Solver for Large-scale genetic variant data

    rivas-lab/snpnet’s past year of commit activity
    R 20 3 3 0 Updated Mar 5, 2024
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