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Behavior and governance updates: - Add and adopt a generic r-package-maintainer skill with explicit workflow, branch governance, validation, and commit standards. - Standardize all skill files to a unified structure with a dedicated References section. - Add explicit solo-maintainer bypass rule semantics (PR-merge-only, no direct push path). Skills and docs updates: - Add skills index and rendered skill pages in pkgdown using include-based wrappers from inst/skills sources. - Keep one wrapper per skill and embed references on the same page to avoid content duplication. - Update README/PROJECT_DESIGN/NEWS to reflect AI-doc artifacts, skills workflow, and pkgdown skills integration. - Add AI-doc machine artifacts and mirrors: llms.txt, llms-full.txt, pkgdown/extra copies. CI and audit tooling: - Add scripts/check-ai-docs.sh and wire into R-CMD-check workflow. - Extend r-package-maintainer checklist/standards with pkgdown wrapper and .Rbuildignore rules for pkgdown-only skill wrappers. Pkgdown and check-related fixes: - Add skills menu entries (one per skill) and skills articles to _pkgdown.yml. - Exclude vignettes/skills-*.qmd from R package builds via .Rbuildignore to avoid vignette-engine notes. Validation run during audit: - bash scripts/check-ai-docs.sh: PASS. - Rscript -e 'pkgdown::build_site()': PASS (remaining accessibility note: missing alt text on README logo). - R CMD check --no-manual .: completed with warnings/notes from local hidden/build artifacts and local check directory context. Notes: - This commit intentionally includes governance/doc/skills synchronization and pkgdown-rendering infrastructure as one cohesive change set.
Changes: - Update r-package-maintainer skill to prefer devtools::check() for local release/audit validation. - Update maintainer checklist validation section to require devtools::check() as the primary local package check. - Clarify that R CMD check is used only when explicit tarball-level parity is needed. Validation run (this commit cycle): - bash scripts/check-ai-docs.sh: PASS. - Rscript -e 'pkgdown::build_site()': PASS (accessibility note only: missing alt text on README logo). - Rscript -e 'devtools::check()': PASS with 0 errors, 0 warnings, 0 notes. Outcome: - Commit audit requirement now aligns with requested local check stability preference.
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Summary
This PR finalizes the skills/documentation governance work and aligns the repository with the new reusable maintainer standard.
Main changes
r-package-maintainerskill with reusable governance, validation, branch protection, commit template, and skill design standards.SKILL.mdfiles to a consistent structure with a dedicated## Referencessection.llms.txt,llms-full.txtscripts/check-ai-docs.shR-CMD-check.vignettes/agent-quick-index.qmdvignettes/api-contracts.qmd.vignettes/skills-*.qmd) using include-based wrappers with single-source content frominst/skills.NEWS.mdPROJECT_DESIGN.mdREADME.mdr-package-maintainerto preferdevtools::check()for local audit runs..Rbuildignoreso pkgdown-only skill wrappers are excluded from package-build vignette checks.Why
Validation
bash scripts/check-ai-docs.sh-> PASSRscript -e 'pkgdown::build_site()'-> PASSRscript -e 'devtools::check()'-> PASS (0 errors, 0 warnings, 0 notes)Notes