Added inheritance filter to gemini plugin#223
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Finally works!! Please review @brainstorm @guillermo-carrasco @robinandeer |
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| gemini_db = "tests/fixtures/HapMapFew.db" | ||
| return gemini_db | ||
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| @pytest.fixture(scope='function') |
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Does this decorator tell you when that "big" GEMINI db is not there?
Would it make sense to be a bit smarter here and pull the S3 file when and if it's not present while running the testsuite? Could save some time for new devs/beginners before they figure it out when reading the docs...
Automation >> Docs
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Sorry I added this then changed my mind but forgot to remove. Thanks for noting!
We should have a dedicated test database as issued in #225
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Cool stuff Måns! Just went through the PR, seems fine to me except the HapMapMany test/comment I left... It would make sense to have an exception for pulling the data from S3: When tests are running on TravisCI, do not pull those in. Other than that, excellent job! ;) |
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I have no idea why the tests fails, it's working on my local installation... |
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@robinandeer would you like to have a last review of this? |
- Add a .coveragec file to control what code is excluded when checking test coverage. Modify this file if there is repeated types of code that should be excluded from coverage testing. - Remove coverage testing when using gemini.gim since it does not work.
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hmm I don't even get what's the problem exactly, the stacktrace is confusing :-/ |
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@guillermo-carrasco think that the problem has to do with gemini.gim uses |
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How are we standing on this? Doesn't GEMINI do a test for this case or are they not using py.test? I don't like the idea of merging in code that will make tests fail just bc having a "broken master branch" tag in the README is not a good thing for potential collaborators etc. to see @moonso @brainstorm @guillermo-carrasco @henrikstranneheim ?? |
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I had to deal with GEMINI's "testsuite" in PR arq5x/gemini#719... TL;DR: Not fun. Best chance you guys get is pinging BrentP on this if you are really stuck, IMHO... |
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Yeah let's bring in BrentP and see what he has to say Otherwise I guess we'll drop that unit test and/or work around it 😕 |
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