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safii-74/README.md

Hi, I'm Moustafa πŸ‘‹

Bioinformatician | Bio Medical Data Science | Healthcare & ML

B.Sc. in Bioinformatics @ Egypt-Japan University of Science & Technology (E-JUST)

I work at the intersection of biomedical signals, genomic data, and deep learning β€” combining EEG/ECG analysis, RNA-Seq differential expression, and medical imaging models to build tools for healthcare and neuroscience.


πŸ”¬ What I work on

  • Brain-Computer Interfaces (BCI) β€” EEG-based assistive motion systems, signal preprocessing, feature extraction, and real-time classification
  • Bioinformatics β€” RNA-Seq differential gene expression pipelines, from raw counts to biological interpretation
  • Medical Imaging & Healthcare ML β€” CNNs for diagnostic support, feature-selection optimization (GA/PSO) for clinical prediction
  • Biomedical Signal Processing β€” multimodal EEG + ECG analysis for stress detection and biometric identification

🧬 Featured Projects

  • BCI Assistive Motion System (Graduation Project) β€” EEG-based BCI for assistive motion control: preprocessing, feature extraction, classification, real-time response
  • SCDM β€” EEG-to-fNIRS Cross-Modal Generation β€” Reimplementation of the SCDM model for generating fNIRS signals from EEG in motor-imagery BCIs
  • Stress Detection from EEG & ECG β€” Multimodal model to detect and quantify stress states for health monitoring
  • EEG-Based Person Identification & Authentication β€” Deep learning for biometric identification using EEG as a secure biometric
  • RNA-Seq Differential Expression β€” Arabidopsis thaliana Grafting β€” Differential expression analysis across genotype groups from RNA-Seq counts
  • Automated Bone Fracture Detection β€” CNN model for fracture detection in medical images
  • FEA of a Powered Lower-Limb Prosthesis β€” COMSOL Multiphysics simulation with comparative biomaterial selection
  • Diabetes Prediction Optimization β€” GA vs. PSO feature selection with Random Forest & Logistic Regression

πŸ“„ Publications

  • Advanced Methodologies for Real-Time Non-Invasive Brain–Computer Interfaces: A Comprehensive Review β€” Author

πŸ› οΈ Technical Skills

Programming: Python Β· R Β· C++ Β· SQL Β· BioPython Biomedical Signals: EEG & ECG preprocessing, feature extraction, classification Machine Learning: Supervised & unsupervised learning, feature selection (GA/PSO), model evaluation Deep Learning: CNNs, RNNs/LSTMs for medical imaging & biosignals Bioinformatics: RNA-Seq & differential expression, sequence alignment, structural bioinformatics Simulation: COMSOL Multiphysics (thermal/mechanical FEA) Data & Visualization: Power BI, Excel, Pandas, PyMOL, VMD

πŸ“« Get in touch

Popular repositories Loading

  1. SCDM-EEG-to-fNIRS SCDM-EEG-to-fNIRS Public

    Spatial Cross-Modal Diffusion Model for synthesizing fNIRS hemodynamic signals from EEG β€” enabling hybrid Brain-Computer Interfaces without fNIRS hardware. HRF convolution preprocessing, gradient-s…

    Python 3

  2. safii-74 safii-74 Public

    My GitHub profile README

  3. -Secure-EEG-Based-Person-Identification-and-Authentication-Systems -Secure-EEG-Based-Person-Identification-and-Authentication-Systems Public

    Secure EEG-Based Person Identification and Authentication Systems Using Deep Learning

    Jupyter Notebook

  4. FEA-Biomaterial-Selection-COMSOL FEA-Biomaterial-Selection-COMSOL Public

    Finite Element Simulation and Biomaterial Selection for a BCI-Controlled Powered Lower-Limb Prosthesis Using COMSOL Multiphysics

  5. telemed-cdss telemed-cdss Public

    Clinical Decision Support System demonstrator built on MIMIC-IV-ED Demo. SIRS/sepsis screening, ML classification, MQTT streaming, Streamlit dashboard with audit trail.

    Python