Sanjay Kumar Srikakulam sanjaysrikakulam

Sanjay Kumar Srikakulam

Computational biology, and the infrastructure that runs it.

Postdoctoral researcher at Forschungszentrum Jülich, working across both the research and the infrastructure of computational biology. Currently applying AI and agentic frameworks to the biocuration of mass spectrometry literature, exploring small language models (SLMs) for annotating mass spectra, and building algorithms for large-scale sequence indexing.

CV and portfolio → sanjay.srikakulam.de

Selected work

AlphaFold2 non-Docker _{AlphaFold2 without Docker, for shared HPC clusters where root is unavailable.}	MetaProFi _{Chunked Bloom filter for protein and nucleotide sequence search at petabyte scale.}
Galaxy Europe infrastructure _{Meta-scheduling, cloud infrastructure, and operations for the Galaxy Europe platform.}	de.NBI Service Registry _{Registration platform for de.NBI and ELIXIR Germany services, with a REST API.}
TPV Broker _{Meta-scheduler for Total Perspective Vortex job routing, run as a standalone service.}	d-StructMAn _{Containerised structural annotation, from genetic variants to whole proteomes.}
GROMACS utility scripts _{Utility scripts for setting up and analysing GROMACS molecular dynamics simulations.}	alpine-apache _{Alpine Linux Apache and MySQL image for hosting CMS such as WordPress and TYPO3.}