When I run phaser_expr_matrix.py with the suggested python 2.7, I get this error for every line of the BED file:
[E::get_intv] Failed to parse TBX_GENERIC, was wrong -p [type] used?
The offending line was: "10 ENSRNOG00000033508 57185346 57238531 1|0 0|0 [...]
The column order is wrong because the pandas DataFrame is initialized with a dictionary. Pandas documentation says "column order follows insertion-order for Python 3.6 and later." When I run phaser_expr_matrix.py with python3, column order is correct and it runs fine.
When I run
phaser_expr_matrix.pywith the suggested python 2.7, I get this error for every line of the BED file:The column order is wrong because the pandas DataFrame is initialized with a dictionary. Pandas documentation says "column order follows insertion-order for Python 3.6 and later." When I run
phaser_expr_matrix.pywith python3, column order is correct and it runs fine.