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Build with 6.3.3#167

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joXemMx merged 76 commits into
masterfrom
build-with-6.3.3-SNAPSHOT
Oct 15, 2025
Merged

Build with 6.3.3#167
joXemMx merged 76 commits into
masterfrom
build-with-6.3.3-SNAPSHOT

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@joXemMx

@joXemMx joXemMx commented Oct 15, 2025

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  • updated client libraries for SIRIUS v6.3.3
  • new generator for Python
  • a bunch of bugfixes
  • automated test pipelines working again
  • some quality of life changes, e.g. Helper class

joXemMx and others added 30 commits September 21, 2025 13:45
* Auto-Updated OpenAPI Clients

* Auto-Generated RSirius Manual

* add all missing apis

* move missing test stubs into classes

* move missing test stubs into classes also for R

---------

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
Co-authored-by: joXemMx <jonas.em@t-online.de>
Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>
…generator@071540f55a6a69471a118446dc05e76a59de0940)
joXemMx and others added 25 commits October 2, 2025 17:39
…ated tests (#164)

Important changes for future reference: 
- select_header in api_client.mustache needed indexing adjustment [[1]] instead of [1]
- tomato_small.sirius was moved as prerelease asset for download via wget, as university cloud does not allow download from link anymore

* error 423 seems tomato_small is locked, may be due to rights

* add missing tests

* fix filename

* still need to load Rsirius (NOT done automatically by testthat)

* remove debug prints

* explicitly set sirius_port

* use custom multireporter

* remove deliberate fail

* remove old TODO

* quick change to cache 6.3.3-SNAPSHOT specifically

* use wget

* fix list indexing in select_header

* set await_deletion for job deletion

* reset update-api for now

* non-verbose wget
…aryMatchesPaged (data.frame deserialization issues)
…aryMatchesPaged (data.frame deserialization issues) in mustache file
@joXemMx

joXemMx commented Oct 15, 2025

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Comment: Tests fail here as the main does not have SIRIUS 6.3.3 (or any other version) cached, but tests just passed on the branch itself so we can merge regardless.

@joXemMx joXemMx merged commit 2d7249f into master Oct 15, 2025
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@joXemMx joXemMx deleted the build-with-6.3.3-SNAPSHOT branch February 13, 2026 20:51
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