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…s3-methods Convert manipulate_species functions to S3 methods
The following simple code demonstrates the problem:
```
test <- function(params, ...) {
UseMethod("test")
}
test.MizerParams <- function(params, p = 1) {
p
}
test(NS_params, p = 1)
```
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Convert most functions that take a MizerParams or a MizerSim object as first argument into S3 methods to make it easier for extension packages to modify their behaviour. See #256