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updated sample names, according to Sebastian Ginzels list for Inform … #163

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94 changes: 47 additions & 47 deletions data/samplesheets/131015_SN737_0288_AD287JACXX_spike.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,47 +1,47 @@
[Header],,,,,,,,,,,
IEMFileVersion,5,,,,,,,,,,
Date,10/15/13,,,,,,,,,,
Workflow,GenerateFASTQ,,,,,,,,,,
Application,HiSeq FASTQ Only,,,,,,,,,,
Instrument Type,HiSeq 1500/2500,,,,,,,,,,
Assay,Agilent_Sure_SelectXT,,,,,,,,,,
Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
Chemistry,Default,,,,,,,,,,
Description,,,,,,,,,,,
Operator,Katayoun Alemazkour/Michael Gombert,,,,,,,,,,
Backup_NAS_name,Phex,,,,,,,,,,
kind_of_run,2x101bp,,,,,,,,,,
[Reads],,,,,,,,,,,
101,,,,,,,,,,,
101,,,,,,,,,,,
[Settings],,,,,,,,,,,
ReverseComplement,0,,,,,,,,,,
Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
,,,,,,,,,,,
[Data],,,,,,,,,,,
Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
1,514_rez2,,,,Index_4,TGACCA,Inform,,,,
1,514_rez_pSCT,,,,Index_6,GCCAAT,Inform,,,,
1,514_rem,,,,Index_12,CTTGTA,Inform,,,,
2,514_pSCT,,,,Index_4,TGACCA,Inform,,,,
2,514_ini,,,,Index_6,GCCAAT,Inform,,,,
2,514_ini2,,,,Index_12,CTTGTA,Inform,,,,
3,590_rez,,,,Index_4,TGACCA,Inform,,,,
3,590_rez_pSCT,,,,Index_6,GCCAAT,Inform,,,,
3,590_rem,,,,Index_12,CTTGTA,Inform,,,,
4,590_DONOR,,,,Index_6,GCCAAT,Inform,,,,
4,590_pSCT,,,,Index_12,CTTGTA,Inform,,,,
4,660_rez,,,,Index_4,TGACCA,Inform,,,,
5,660_rez_pSCT,,,,Index_4,TGACCA,Inform,,,,
5,660_rem,,,,Index_6,GCCAAT,Inform,,,,
5,660_pSCT,,,,Index_12,CTTGTA,Inform,,,,
6,685_rez,,,,Index_4,TGACCA,Inform,,,,
6,685_rez_pSCT,,,,Index_6,GCCAAT,Inform,,,,
6,735_rez,,,,Index_12,CTTGTA,Inform,,,,
7,685_pSCT,,,,Index_4,TGACCA,Inform,,,,
7,707_rez,,,,Index_6,GCCAAT,Inform,,,,
7,707_rez_pSCT,,,,Index_12,CTTGTA,Inform,,,,
8,707_rem,,,,Index_4,TGACCA,Inform,,,,
8,685_rem,,,,Index_6,GCCAAT,Inform,,,,
8,735_rez_pSCT,,,,Index_12,CTTGTA,Inform,,,,
[Header],,,,,,,,,,,,
IEMFileVersion,5,,,,,,,,,,,
Date,10/15/13,,,,,,,,,,,
Workflow,GenerateFASTQ,,,,,,,,,,,
Application,HiSeq FASTQ Only,,,,,,,,,,,
Instrument Type,HiSeq 1500/2500,,,,,,,,,,,
Assay,Agilent_Sure_SelectXT,,,,,,,,,,,
Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,,
Chemistry,Default,,,,,,,,,,,
Description,,,,,,,,,,,,
Operator,Katayoun Alemazkour/Michael Gombert,,,,,,,,,,,
Backup_NAS_name,Phex,,,,,,,,,,,
kind_of_run,2x101bp,,,,,,,,,,,
[Reads],,,,,,,,,,,,
101,,,,,,,,,,,,
101,,,,,,,,,,,,
[Settings],,,,,,,,,,,,
ReverseComplement,0,,,,,,,,,,,
Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,,
AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,,
,,,,,,,,,,,,
[Data],,,,,,,,,,,,
Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample,spike_original_but_wrong_sample_id
2,514_INIT,,,,Index_6,GCCAAT,Inform,,514,,,514_ini
2,514_INIT_B,,,,Index_12,CTTGTA,Inform,,514,,,514_ini2
2,514_TREMI,,,,Index_4,TGACCA,Inform,,514,,,514_pSCT
1,514_REMI,,,,Index_12,CTTGTA,Inform,,514,,,514_rem
1,514_TRLPS,,,,Index_6,GCCAAT,Inform,,514,,,514_rez_pSCT
1,514_RLPS,,,,Index_4,TGACCA,Inform,,514,,,514_rez2
4,590_TRANS,,,,Index_6,GCCAAT,Inform,,590,,,590_DONOR
4,590_TREMI,,,,Index_12,CTTGTA,Inform,,590,,,590_pSCT
3,590_REMI,,,,Index_12,CTTGTA,Inform,,590,,,590_rem
3,590_RLPS,,,,Index_4,TGACCA,Inform,,590,,,590_rez
3,590_TRLPS,,,,Index_6,GCCAAT,Inform,,590,,,590_rez_pSCT
5,660_TREMI,,,,Index_12,CTTGTA,Inform,,660,,,660_pSCT
5,660_rem,,,,Index_6,GCCAAT,Inform,,,,,
4,660_RLPS,,,,Index_4,TGACCA,Inform,,660,,,660_rez
5,660_TRLPS,,,,Index_4,TGACCA,Inform,,660,,,660_rez_pSCT
7,685_pSCT,,,,Index_4,TGACCA,Inform,,,,,
8,685_rem,,,,Index_6,GCCAAT,Inform,,,,,
6,685_rez,,,,Index_4,TGACCA,Inform,,,,,
6,685_rez_pSCT,,,,Index_6,GCCAAT,Inform,,,,,
8,707_REMI,,,,Index_4,TGACCA,Inform,,707,,,707_rem
7,707_rez,,,,Index_6,GCCAAT,Inform,,,,,
7,707_TRLPS,,,,Index_12,CTTGTA,Inform,,707,,,707_rez_pSCT
6,735_RLPS,,,,Index_12,CTTGTA,Inform,,735,,,735_rez
8,735_rez_pSCT,,,,Index_12,CTTGTA,Inform,,,,,
94 changes: 47 additions & 47 deletions data/samplesheets/140128_SN737_0297_AD2HGUACXX_spike.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,47 +1,47 @@
[Header],,,,,,,,,,,
IEMFileVersion,5,,,,,,,,,,
Date,01/28/14,,,,,,,,,,
Workflow,GenerateFASTQ,,,,,,,,,,
Application,HiSeq FASTQ Only,,,,,,,,,,
Instrument Type,HiSeq 1500/2500,,,,,,,,,,
Assay,Agilent_Sure_SelectXT,,,,,,,,,,
Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
Chemistry,Default,,,,,,,,,,
Description,,,,,,,,,,,
Operator,Katayoun Alemazkour/Michael Gombert,,,,,,,,,,
Backup_NAS_name,Phex,,,,,,,,,,
kind_of_run,2x101bp,,,,,,,,,,
[Reads],,,,,,,,,,,
101,,,,,,,,,,,
101,,,,,,,,,,,
[Settings],,,,,,,,,,,
ReverseComplement,0,,,,,,,,,,
Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
,,,,,,,,,,,
[Data],,,,,,,,,,,
Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
1,AT1_tumor,,,,Index_4,TGACCA,AT_NBS,,,,
1,AT1_healthy,,,,Index_6,GCCAAT,AT_NBS,,,,
1,AT2_tumor,,,,Index_12,CTTGTA,AT_NBS,,,,
2,AT2_healthy,,,,Index_4,TGACCA,AT_NBS,,,,
2,NBS_1_tumor,,,,Index_6,GCCAAT,AT_NBS,,,,
2,NBS_1_healthy,,,,Index_12,CTTGTA,AT_NBS,,,,
3,NBS_2_tumor,,,,Index_4,TGACCA,AT_NBS,,,,
3,NBS_2_healthy,,,,Index_6,GCCAAT,AT_NBS,,,,
3,NBS_3_tumor,,,,Index_12,CTTGTA,AT_NBS,,,,
4,Sa_Do_MNC_7,,,,Index_4,TGACCA,Dohle,,,,
4,Sa_Do_MNC_27_rem,,,,Index_6,GCCAAT,Dohle,,,,
4,Alps_21,,,,Index_12,CTTGTA,Schafiq,,,,
5,HV171,,,,Index_4,TGACCA,INFORM,,,,
5,ALPS_17,,,,Index_6,GCCAAT,Alps,,ALPS_17,patient,
5,ALPS_18,,,,Index_12,CTTGTA,Alps,,ALPS_18,patient,
6,17870,,,,Index_4,TGACCA,INFORM,,,,
6,90127,,,,Index_6,GCCAAT,INFORM,,,,
6,KA28,,,,Index_12,CTTGTA,INFORM,,,,
7,60101,,,,Index_4,TGACCA,INFORM,,,,
7,60210,,,,Index_6,GCCAAT,INFORM,,,,
7,KA28,,,,Index_12,CTTGTA,INFORM,,,,
8,17463,,,,Index_4,TGACCA,INFORM,,,,
8,17763,,,,Index_6,GCCAAT,INFORM,,,,
8,NBS_3_tumor,,,,Index_12,CTTGTA,AT_NBS,,,,
[Header],,,,,,,,,,,,
IEMFileVersion,5,,,,,,,,,,,
Date,01/28/14,,,,,,,,,,,
Workflow,GenerateFASTQ,,,,,,,,,,,
Application,HiSeq FASTQ Only,,,,,,,,,,,
Instrument Type,HiSeq 1500/2500,,,,,,,,,,,
Assay,Agilent_Sure_SelectXT,,,,,,,,,,,
Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,,
Chemistry,Default,,,,,,,,,,,
Description,,,,,,,,,,,,
Operator,Katayoun Alemazkour/Michael Gombert,,,,,,,,,,,
Backup_NAS_name,Phex,,,,,,,,,,,
kind_of_run,2x101bp,,,,,,,,,,,
[Reads],,,,,,,,,,,,
101,,,,,,,,,,,,
101,,,,,,,,,,,,
[Settings],,,,,,,,,,,,
ReverseComplement,0,,,,,,,,,,,
Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,,
AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,,
,,,,,,,,,,,,
[Data],,,,,,,,,,,,
Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample,spike_original_but_wrong_sample_id
1,AT1_tumor,,,,Index_4,TGACCA,AT_NBS,,,,,
1,AT1_healthy,,,,Index_6,GCCAAT,AT_NBS,,,,,
1,AT2_tumor,,,,Index_12,CTTGTA,AT_NBS,,,,,
2,AT2_healthy,,,,Index_4,TGACCA,AT_NBS,,,,,
2,NBS_1_tumor,,,,Index_6,GCCAAT,AT_NBS,,,,,
2,NBS_1_healthy,,,,Index_12,CTTGTA,AT_NBS,,,,,
3,NBS_2_tumor,,,,Index_4,TGACCA,AT_NBS,,,,,
3,NBS_2_healthy,,,,Index_6,GCCAAT,AT_NBS,,,,,
3,NBS_3_tumor,,,,Index_12,CTTGTA,AT_NBS,,,,,
4,Sa_Do_MNC_7,,,,Index_4,TGACCA,Dohle,,,,,
4,Sa_Do_MNC_27_rem,,,,Index_6,GCCAAT,Dohle,,,,,
4,Alps_21,,,,Index_12,CTTGTA,Schafiq,,,,,
5,685_INIT,,,,Index_4,TGACCA,Inform,,685,,,HV171
5,ALPS_17,,,,Index_6,GCCAAT,Alps,,ALPS_17,patient,,
5,ALPS_18,,,,Index_12,CTTGTA,Alps,,ALPS_18,patient,,
6,735_TRLPS,,,,Index_4,TGACCA,Inform,,735,,,17870
6,90127,,,,Index_6,GCCAAT,Inform,,,,,
6,590_INIT,,,,Index_12,CTTGTA,Inform,,590,,,KA28
7,60101,,,,Index_4,TGACCA,Inform,,,,,
7,60210,,,,Index_6,GCCAAT,Inform,,,,,
7,590_INIT,,,,Index_12,CTTGTA,Inform,,590,,,KA28
8,735_REMI,,,,Index_4,TGACCA,Inform,,735,,,17463
8,735_TREMI,,,,Index_6,GCCAAT,Inform,,735,,,17763
8,NBS_3_tumor,,,,Index_12,CTTGTA,AT_NBS,,,,,
96 changes: 48 additions & 48 deletions data/samplesheets/140306_SN737_0303_AC3FLHACXX_spike.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,48 +1,48 @@
[Header],,,,,,,,,,,
IEMFileVersion,5,,,,,,,,,,
Date,03/06/14,,,,,,,,,,
Workflow,GenerateFASTQ,,,,,,,,,,
Application,HiSeq FASTQ Only,,,,,,,,,,
Instrument Type,HiSeq 1500/2500,,,,,,,,,,
Assay,Agilent_Sure_SelectXT,,,,,,,,,,
Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
Chemistry,Default,,,,,,,,,,
Description,,,,,,,,,,,
Operator,Katayoun Alemazkour/Michael Gombert,,,,,,,,,,
Investigator,Ute Fischer,,,,,,,,,,
Backup_NAS_name,Phex,,,,,,,,,,
kind_of_run,2x101bp,,,,,,,,,,
[Reads],,,,,,,,,,,
101,,,,,,,,,,,
101,,,,,,,,,,,
[Settings],,,,,,,,,,,
ReverseComplement,0,,,,,,,,,,
Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
,,,,,,,,,,,
[Data],,,,,,,,,,,
Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
1,1_T,,,,Index_4,TGACCA,Maus_Hauer,,1,tumor,
1,1_C,,,,Index_6,GCCAAT,Maus_Hauer,,1,healthy,
1,2_T,,,,Index_12,CTTGTA,Maus_Hauer,,2,tumor,
2,2_C,,,,Index_4,TGACCA,Maus_Hauer,,2,healthy,
2,3_T,,,,Index_6,GCCAAT,Maus_Hauer,,3,tumor,
2,3_C,,,,Index_12,CTTGTA,Maus_Hauer,,3,healthy,
3,4_T,,,,Index_4,TGACCA,Maus_Hauer,,4,tumor,
3,4_C,,,,Index_6,GCCAAT,Maus_Hauer,,4,healthy,
3,5_T,,,,Index_12,CTTGTA,Maus_Hauer,,5,tumor,
4,5_C,,,,Index_4,TGACCA,Maus_Hauer,,5,healthy,
4,6_T,,,,Index_6,GCCAAT,Maus_Hauer,,6,tumor,
4,6_C,,,,Index_12,CTTGTA,Maus_Hauer,,6,healthy,
5,7_T,,,,Index_4,TGACCA,Maus_Hauer,,7,tumor,
5,7_C,,,,Index_6,GCCAAT,Maus_Hauer,,7,healthy,
5,8_T,,,,Index_12,CTTGTA,Maus_Hauer,,8,tumor,
6,8_C,,,,Index_4,TGACCA,Maus_Hauer,,8,healthy,
6,9_T,,,,Index_6,GCCAAT,Maus_Hauer,,9_303,tumor,
6,9_C,,,,Index_12,CTTGTA,Maus_Hauer,,9_303,healthy,
7,10_T,,,,Index_4,TGACCA,Maus_Hauer,,10,tumor,
7,17424,,,,Index_6,GCCAAT,INFORM,,,,
7,10_C,,,,Index_12,CTTGTA,Maus_Hauer,,10,healthy,
8,11_T,,,,Index_4,TGACCA,Maus_Hauer,,11,tumor,
8,17034,,,,Index_6,GCCAAT,INFORM,,,,
8,11_C,,,,Index_12,CTTGTA,Maus_Hauer,,11,healthy,
[Header],,,,,,,,,,,,
IEMFileVersion,5,,,,,,,,,,,
Date,03/06/14,,,,,,,,,,,
Workflow,GenerateFASTQ,,,,,,,,,,,
Application,HiSeq FASTQ Only,,,,,,,,,,,
Instrument Type,HiSeq 1500/2500,,,,,,,,,,,
Assay,Agilent_Sure_SelectXT,,,,,,,,,,,
Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,,
Chemistry,Default,,,,,,,,,,,
Description,,,,,,,,,,,,
Operator,Katayoun Alemazkour/Michael Gombert,,,,,,,,,,,
Investigator,Ute Fischer,,,,,,,,,,,
Backup_NAS_name,Phex,,,,,,,,,,,
kind_of_run,2x101bp,,,,,,,,,,,
[Reads],,,,,,,,,,,,
101,,,,,,,,,,,,
101,,,,,,,,,,,,
[Settings],,,,,,,,,,,,
ReverseComplement,0,,,,,,,,,,,
Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,,
AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,,
,,,,,,,,,,,,
[Data],,,,,,,,,,,,
Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample,spike_original_but_wrong_sample_id
1,1_T,,,,Index_4,TGACCA,Maus_Hauer,,1,tumor,,
1,1_C,,,,Index_6,GCCAAT,Maus_Hauer,,1,healthy,,
1,2_T,,,,Index_12,CTTGTA,Maus_Hauer,,2,tumor,,
2,2_C,,,,Index_4,TGACCA,Maus_Hauer,,2,healthy,,
2,3_T,,,,Index_6,GCCAAT,Maus_Hauer,,3,tumor,,
2,3_C,,,,Index_12,CTTGTA,Maus_Hauer,,3,healthy,,
3,4_T,,,,Index_4,TGACCA,Maus_Hauer,,4,tumor,,
3,4_C,,,,Index_6,GCCAAT,Maus_Hauer,,4,healthy,,
3,5_T,,,,Index_12,CTTGTA,Maus_Hauer,,5,tumor,,
4,5_C,,,,Index_4,TGACCA,Maus_Hauer,,5,healthy,,
4,6_T,,,,Index_6,GCCAAT,Maus_Hauer,,6,tumor,,
4,6_C,,,,Index_12,CTTGTA,Maus_Hauer,,6,healthy,,
5,7_T,,,,Index_4,TGACCA,Maus_Hauer,,7,tumor,,
5,7_C,,,,Index_6,GCCAAT,Maus_Hauer,,7,healthy,,
5,8_T,,,,Index_12,CTTGTA,Maus_Hauer,,8,tumor,,
6,8_C,,,,Index_4,TGACCA,Maus_Hauer,,8,healthy,,
6,9_T,,,,Index_6,GCCAAT,Maus_Hauer,,9_303,tumor,,
6,9_C,,,,Index_12,CTTGTA,Maus_Hauer,,9_303,healthy,,
7,10_T,,,,Index_4,TGACCA,Maus_Hauer,,10,tumor,,
7,685_TRLPS,,,,Index_6,GCCAAT,Inform,,685,,,17424
7,10_C,,,,Index_12,CTTGTA,Maus_Hauer,,10,healthy,,
8,11_T,,,,Index_4,TGACCA,Maus_Hauer,,11,tumor,,
8,685_REMI,,,,Index_6,GCCAAT,Inform,,685,,,17034
8,11_C,,,,Index_12,CTTGTA,Maus_Hauer,,11,healthy,,
98 changes: 49 additions & 49 deletions data/samplesheets/140318_SN737_0304_AC41UTACXX_spike.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,49 +1,49 @@
[Header],,,,,,,,,,,
IEMFileVersion,5,,,,,,,,,,
Date,03/18/14,,,,,,,,,,
Workflow,GenerateFASTQ,,,,,,,,,,
Application,HiSeq FASTQ Only,,,,,,,,,,
Instrument Type,HiSeq 1500/2500,,,,,,,,,,
Assay,Agilent_Sure_SelectXT,,,,,,,,,,
Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,
Chemistry,Default,,,,,,,,,,
Description,,,,,,,,,,,
Operator,Katayoun Alemazkour/Michael Gombert,,,,,,,,,,
Investigator,DKTK,,,,,,,,,,
Backup_NAS_name,Phex,,,,,,,,,,
kind_of_run,2x101bp,,,,,,,,,,
Notes,AML_m_14_ini_typo in samplesheet/is an initial 30ng,,,,,,,,,,
[Reads],,,,,,,,,,,
101,,,,,,,,,,,
101,,,,,,,,,,,
[Settings],,,,,,,,,,,
ReverseComplement,0,,,,,,,,,,
Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,
AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,
,,,,,,,,,,,
[Data],,,,,,,,,,,
Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample
1,brain_skin_w_1,,,,,TGACCA,Hoell,,,,
1,brain_skin_m_2,,,,,GCCAAT,Hoell,,,,
1,brain_skin_m_3,,,,,CTTGTA,Hoell,,,,
2,brain_skin_m_4,,,,,TGACCA,Hoell,,,,
2,brain_skin_w_5,,,,,GCCAAT,Hoell,,,,
2,1_LCL_wt_EBV,,,,,CTTGTA,AB_MUC_cells,,,,
3,2_LCL_wt_EBV,,,,,TGACCA,AB_MUC_cells,,,,
3,3_EBNA3C_def_LCLs,,,,,GCCAAT,AB_MUC_cells,,,,
3,4_EBNA3C_def_LCLs,,,,,CTTGTA,AB_MUC_cells,,,,
4,StA_BS,,,,,TGACCA,AT_StA,,,,
4,StA_SS,,,,,GCCAAT,AT_StA,,,,
4,StA_ES,,,,,CTTGTA,AT_StA,,,,
5,UKDEBV_201P,,,,,TGACCA,UKDEBV,,,,
5,UKDEBV_201B,,,,,GCCAAT,UKDEBV,,,,
5,UKDEBV_201M,,,,,CTTGTA,UKDEBV,,,,
6,UKDEBV_201F,,,,,TGACCA,UKDEBV,,,,
6,AML_m_20_initial,,,,,GCCAAT,DKTK,,,,
6,ALPS_22,,,,,CTTGTA,Alps,,ALPS_22,patient,
7,AML_m_14_inititial,,,,,TGACCA,DKTK,,,,
7,AML_m_25_remission,,,,,GCCAAT,DKTK,,,,
7,AML_m_25_initial,,,,,CTTGTA,DKTK,,,,
8,A198_TALL,,,,,TGACCA,Fischer,,,,
8,A198_Remission,,,,,GCCAAT,Fischer,,,,
8,M248,,,,,CTTGTA,INFORM,,,,
[Header],,,,,,,,,,,,
IEMFileVersion,5,,,,,,,,,,,
Date,03/18/14,,,,,,,,,,,
Workflow,GenerateFASTQ,,,,,,,,,,,
Application,HiSeq FASTQ Only,,,,,,,,,,,
Instrument Type,HiSeq 1500/2500,,,,,,,,,,,
Assay,Agilent_Sure_SelectXT,,,,,,,,,,,
Index Adapters,Agilent_Sure_SelectXT,,,,,,,,,,,
Chemistry,Default,,,,,,,,,,,
Description,,,,,,,,,,,,
Operator,Katayoun Alemazkour/Michael Gombert,,,,,,,,,,,
Investigator,DKTK,,,,,,,,,,,
Backup_NAS_name,Phex,,,,,,,,,,,
kind_of_run,2x101bp,,,,,,,,,,,
Notes,AML_m_14_ini_typo in samplesheet/is an initial 30ng,,,,,,,,,,,
[Reads],,,,,,,,,,,,
101,,,,,,,,,,,,
101,,,,,,,,,,,,
[Settings],,,,,,,,,,,,
ReverseComplement,0,,,,,,,,,,,
Adapter,AGATCGGAAGAGCACACGTCTGAACTCCAGTCA,,,,,,,,,,,
AdapterRead2,AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT,,,,,,,,,,,
,,,,,,,,,,,,
[Data],,,,,,,,,,,,
Lane,Sample_ID,Sample_Name,Sample_Plate,Sample_Well,I7_Index_ID,index,Sample_Project,Description,spike_entity_id,spike_entity_role,spike_ignore_sample,spike_original_but_wrong_sample_id
1,brain_skin_w_1,,,,,TGACCA,Hoell,,,,,
1,brain_skin_m_2,,,,,GCCAAT,Hoell,,,,,
1,brain_skin_m_3,,,,,CTTGTA,Hoell,,,,,
2,brain_skin_m_4,,,,,TGACCA,Hoell,,,,,
2,brain_skin_w_5,,,,,GCCAAT,Hoell,,,,,
2,1_LCL_wt_EBV,,,,,CTTGTA,AB_MUC_cells,,,,,
3,2_LCL_wt_EBV,,,,,TGACCA,AB_MUC_cells,,,,,
3,3_EBNA3C_def_LCLs,,,,,GCCAAT,AB_MUC_cells,,,,,
3,4_EBNA3C_def_LCLs,,,,,CTTGTA,AB_MUC_cells,,,,,
4,StA_BS,,,,,TGACCA,AT_StA,,,,,
4,StA_SS,,,,,GCCAAT,AT_StA,,,,,
4,StA_ES,,,,,CTTGTA,AT_StA,,,,,
5,UKDEBV_201P,,,,,TGACCA,UKDEBV,,,,,
5,UKDEBV_201B,,,,,GCCAAT,UKDEBV,,,,,
5,UKDEBV_201M,,,,,CTTGTA,UKDEBV,,,,,
6,UKDEBV_201F,,,,,TGACCA,UKDEBV,,,,,
6,AML_m_20_initial,,,,,GCCAAT,DKTK,,,,,
6,ALPS_22,,,,,CTTGTA,Alps,,ALPS_22,patient,,
7,AML_m_14_inititial,,,,,TGACCA,DKTK,,,,,
7,AML_m_25_remission,,,,,GCCAAT,DKTK,,,,,
7,AML_m_25_initial,,,,,CTTGTA,DKTK,,,,,
8,A198_TALL,,,,,TGACCA,Fischer,,,,,
8,A198_Remission,,,,,GCCAAT,Fischer,,,,,
8,660_INIT,,,,,CTTGTA,Inform,,660,,,M248
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