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Future Directions: Scaling assembly beyond viral genomes

Status: Open.

#88 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Key Milestones: Assembly & Surveillance Pipeline

Status: Open.

#87 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Finalize and tighten the talk

Status: Open.

#86 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Include status update on prototype assembly algorithm in talk

Status: Open.

#85 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Prepare slides on GPU acceleration & higher-dimensional assembly

Status: Open.

#84 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Frame talk narrative: detection → enrichment → accelerated assembly

Status: Open.

#83 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Build demo: COVID-19 identified as coronavirus without prior knowledge

Status: Open.

#82 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Find original SARS-CoV-2 metagenomic sequencing data (early outbreak)

Status: Open.

#81 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Profile memory constraints on GPU (FASTQ size vs. VRAM)

Status: Open.

#80 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Evaluate MMseqs / embedded structure alphabets

Status: Open.

#79 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Evaluate Penguin assembler (amino acid space)

Status: Open.

#78 In smagala/denver;

· adams-yahara opened on Feb 25, 2026

Begin prototype of GPU-accelerated assembly algorithm

Status: Open.

#77 In smagala/denver;

· adams-yahara opened on Feb 25, 2026