Diffusion-Protein-Seq-Gen

Protein sequence generation with diffusion models

Last Updated: 2023-09-23

Summary

This repository integrates state-of-the-art diffusion models to generation protein sequences.

Highlights

1. Diffusion for discrete data
2. Conditional diffusion with desired properties

Diffusion Frameworks

1. Diffusion-LM

Integration Status: Completed

Code base complete. Final clean-up of individual files.

Framework integration in the folder diffusionLM_prot

References:

Li, X., Thickstun, J., Gulrajani, I., Liang, P. S., & Hashimoto, T. B. (2022). Diffusion-lm improves controllable text generation. Advances in Neural Information Processing Systems, 35, 4328-4343.

Original Paper | Original Repository

Diffusion-LM. (Source of figure: Li et al., 2022)