Replace np.in1d with np.isin

[javierggt]

Description

Remove some warnings by replacing all uses of np.in1d with np.isin.

Interface impacts

Testing

Unit tests

• Linux (tests used proseco @b7c8104 needed for test_bad_star_set and not the numpy 2 PR that fixes the warnings)

(ska3-flight) jgonzale sparkles $ git rev-parse HEAD
98f47b27a1066f61c51124bffe4c1a2faf421a30
(ska3-flight) jgonzale sparkles $ pytest sparkles
==================================================================== test session starts =====================================================================
platform linux -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /proj/sot/ska/jgonzalez/git
configfile: pytest.ini
plugins: anyio-4.7.0, timeout-2.3.1
collected 128 items                                                                                                                                          

sparkles/tests/test_checks.py ..................................................................................................                       [ 76%]
sparkles/tests/test_find_er_catalog.py .....                                                                                                           [ 80%]
sparkles/tests/test_review.py .....................                                                                                                    [ 96%]
sparkles/tests/test_yoshi.py ....                                                                                                                      [100%]

=============================================================== 128 passed in 94.25s (0:01:34) ===============================================================
(ska3-flight) jgonzale sparkles $ conda activate ska3-flight-2026.0rc4
(ska3-flight-2026.0rc4) jgonzale sparkles $ pytest sparkles
==================================================================== test session starts =====================================================================
platform linux -- Python 3.13.10, pytest-9.0.1, pluggy-1.6.0
rootdir: /proj/sot/ska/jgonzalez/git
configfile: pytest.ini
plugins: timeout-2.4.0, anyio-4.12.0
collected 128 items                                                                                                                                          

sparkles/tests/test_checks.py ..................................................................................................                       [ 76%]
sparkles/tests/test_find_er_catalog.py .....                                                                                                           [ 80%]
sparkles/tests/test_review.py .....................                                                                                                    [ 96%]
sparkles/tests/test_yoshi.py ....                                                                                                                      [100%]

====================================================================== warnings summary ======================================================================
sparkles/sparkles/tests/test_checks.py: 108 warnings
sparkles/sparkles/tests/test_find_er_catalog.py: 10 warnings
sparkles/sparkles/tests/test_review.py: 91 warnings
sparkles/sparkles/tests/test_yoshi.py: 2 warnings
  /proj/sot/ska/jgonzalez/git/proseco/proseco/guide.py:964: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead.
    bad = np.in1d(cand_guides["id"], list(ACA.bad_star_set))

sparkles/sparkles/tests/test_checks.py::test_include_exclude[ACAReviewTable]
sparkles/sparkles/tests/test_checks.py::test_include_exclude[ACACheckTable]
sparkles/sparkles/tests/test_review.py::test_roll_options_with_include_ids
  /proj/sot/ska/jgonzalez/git/proseco/proseco/acq.py:856: DeprecationWarning: `in1d` is deprecated. Use `np.isin` instead.
    ok = np.in1d(cand_acqs["id"], self.include_ids)

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================================================== 128 passed, 214 warnings in 85.17s (0:01:25) ========================================================

Independent check of unit tests by Jean

• osx pre-hope

(latest) flame:sparkles jean$ pytest
=============================================================== test session starts ===============================================================
platform darwin -- Python 3.12.8, pytest-8.3.4, pluggy-1.5.0
rootdir: /Users/jean/git
configfile: pytest.ini
plugins: anyio-4.7.0, timeout-2.3.1
collected 128 items                                                                                                                               

sparkles/tests/test_checks.py ..................................................................................................            [ 76%]
sparkles/tests/test_find_er_catalog.py .....                                                                                                [ 80%]
sparkles/tests/test_review.py .....................                                                                                         [ 96%]
sparkles/tests/test_yoshi.py ....                                                                                                           [100%]

================================================================ warnings summary =================================================================
sparkles/sparkles/tests/test_review.py::test_jupiter_not_present
sparkles/sparkles/tests/test_review.py::test_jupiter_not_present
  /Users/jean/miniforge3/envs/latest/lib/python3.12/site-packages/bs4/builder/_lxml.py:124: DeprecationWarning: The 'strip_cdata' option of HTMLParser() has never done anything and will eventually be removed.
    parser = parser(

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
======================================================== 128 passed, 2 warnings in 36.49s

Functional tests

No functional testing.