This repository contains code for random forest analysis and the detection of mutational hotspots in Bacillus anthracis.
This code was originally used in the paper "The roles of antimicrobial resistance, phage diversity, isolation source, and selection in shaping the genomic architecture of Bacillus anthracis" which can be found here: https://doi.org/10.1099/mgen.0.000616
The mutational hotsposts code is a modified version of code originally from Cui et al. 2020 (referenced in the paper above).