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Hexagonal Model

Simulation and analysis code for a hexagonal microbial diversity model.

Download

Option 1 (recommended):

git clone https://github.com/sql647/hexagonal-model.git

Option 2:

Click "Code" → "Download ZIP" on GitHub.

Installation

  1. Create a virtual environment (recommended):

python -m venv venv source venv/bin/activate # macOS/Linux

or

venv\Scripts\activate # Windows

  1. Install the package:

pip install -e .

Quick Start

from hexagonal_model.simulation import run_simulation
from hexagonal_model.analysis import compute_diversity

result = run_simulation(grid_size=50, steps=100)
diversity = compute_diversity(result)

print(diversity)