Simulation and analysis code for a hexagonal microbial diversity model.
Option 1 (recommended):
git clone https://github.com/sql647/hexagonal-model.git
Option 2:
Click "Code" → "Download ZIP" on GitHub.
- Create a virtual environment (recommended):
python -m venv venv source venv/bin/activate # macOS/Linux
venv\Scripts\activate # Windows
- Install the package:
pip install -e .
from hexagonal_model.simulation import run_simulation
from hexagonal_model.analysis import compute_diversity
result = run_simulation(grid_size=50, steps=100)
diversity = compute_diversity(result)
print(diversity)