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feat(eval): prepare August ClinVar freeze execution - #25

Merged
srinivasdrona merged 3 commits into
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validation/clinvar-2026-08-freeze-run-v2
Sep 1, 2026
Merged

srinivasdrona merged 3 commits into
mainfrom
validation/clinvar-2026-08-freeze-run-v2

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Summary

  • add the offline Stage 1-2 execution harness for ADR-0020
  • add an exact-source HTTPS transport with strict URL/TLS/no-redirect/bounded-streaming policy
  • add cross-EOL approval hashing, external-root/run-scope preflight, and committed-tree implementation-freeze verification
  • add an immutable prospective overlay, inert draft approval, and operator handoff documentation

Safety boundary

This PR performs no live ClinVar HEAD/GET/download, no label or row inspection, no benchmark/scoring, and no authorization. The repository approval remains DRAFT_PENDING_ADR_0008_X64_WORKER_VERIFICATION, all access attestations are false, and --execute requires a separately supplied valid approval plus explicit transport/date/MD5 lookup factories.

Review history

  • Codex RED tests iterated through adversarial findings
  • Sonnet implementation
  • Opus final committed-tree verdict: PASS
  • fail-closed coverage includes redirects, malformed headers, path/symlink/special files, overflow cleanup, record hash chains, TOCTOU, concurrency, Git-unavailable/unresolvable implementation pins, and typed operator exits

Validation

  • WSL interpreter: /home/sdrona/raptor/bin/python (Python 3.12.3)
  • focused ClinVar/harness suite: 155 passed, 3 skipped
  • authoritative full suite: 1,799 passed, 23 skipped, 0 failed
  • git diff --check: clean
  • working tree: clean
  • no network/download/archive/temp artifacts

Commits

  • 9ac9f90 — offline harness, transport, overlay, draft and tests
  • 06299eb — repin draft implementation freeze to committed module blobs

Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

Copilot-Session: 7c146921-f3dd-4a1e-8cf0-8f574de49204
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

Copilot-Session: 7c146921-f3dd-4a1e-8cf0-8f574de49204
Co-authored-by: Copilot <223556219+Copilot@users.noreply.github.com>

Copilot-Session: 7c146921-f3dd-4a1e-8cf0-8f574de49204
@srinivasdrona
srinivasdrona marked this pull request as ready for review September 1, 2026 04:19
@srinivasdrona
srinivasdrona merged commit 9c7d8f3 into main Sep 1, 2026
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