Fix Hard Coded Paths in Tests

[drkennetz]

I have written many bats tests with hard-coded parameter paths because an absolute path is required. Here is a list of hard-coded paths:

mispriming_library: /home/dkennetz/PrimerTK/test/genomeStandard/bats_tests/data/wf/humrep.ref
mispriming_library: /home/dkennetz/PrimerTK/test/genomeSV/bats_tests/data/sv/humrep.ref
  path: /home/dkennetz/PrimerTK/test/genomeSV/bats_tests/data/sv/input2.csv
  path: /home/dkennetz/PrimerTK/test/genomeSV/bats_tests/data/sv/insertion_input.csv
  path: /home/dkennetz/PrimerTK/test/genomeSV/bats_tests/data/sv/insertion_test.fa
  path: /home/dkennetz/PrimerTK/test/genomeSV/bats_tests/data/sv/test.fa
thermodynamics_path: /home/dkennetz/primer3/src/primer3_config
thermodynamics_path: /home/dkennetz/primer3/src/primer3_config/
thermodynamics_path: '/home/dkennetz/primer3/src/primer3_config'

It would be better to generate these as the test is running, rather than hard-coding these.