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add functions for plotting common features across conditions/comparisons TOC Generator #36: Commit 23a6dfe pushed by DJSiddharthVader
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first attempt at generalizing gene association testing code across as… TOC Generator #35: Commit d68526f pushed by DJSiddharthVader
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huge dump of in progress results for loop nesting. TOC Generator #34: Commit 67b443c pushed by DJSiddharthVader
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add some new plots for exploring loop nesting + reproducibility data TOC Generator #33: Commit b89ff6f pushed by DJSiddharthVader
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scaffold to generate all association testing results TOC Generator #32: Commit ca70716 pushed by DJSiddharthVader
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update loop nesting code to use plyranges instead of bedtools, much s… TOC Generator #31: Commit c23fd59 pushed by DJSiddharthVader
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functionalize code to load HiF data from different features (loops,TA… TOC Generator #30: Commit 44ec7ba pushed by DJSiddharthVader
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misc small changes TOC Generator #29: Commit 03bcf22 pushed by DJSiddharthVader
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delete old messy code I re-wrote in R for these functions TOC Generator #28: Commit 663b6a5 pushed by DJSiddharthVader
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update project dependencies TOC Generator #27: Commit 6900756 pushed by DJSiddharthVader
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re-organize, clean up a bunch of info, still messy TOC Generator #26: Commit 3b87c5e pushed by DJSiddharthVader
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fix bug in generating cooltools TAD calling cmds TOC Generator #25: Commit d801325 pushed by DJSiddharthVader
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move dependency files to their dir + script to make the relevant files TOC Generator #24: Commit 66e7dd2 pushed by DJSiddharthVader
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Move TAD README to TAD script dir + update commands to run to generat… TOC Generator #23: Commit 41e7ff1 pushed by DJSiddharthVader
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fixup! simplify TAD MoC calculation, fix bug so now all pairs of TAD … TOC Generator #22: Commit 59b06b3 pushed by DJSiddharthVader
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misc small updates TOC Generator #21: Commit a8876ad pushed by DJSiddharthVader
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Tidy + functionalize code to generate binwise FGE signals for associa… TOC Generator #20: Commit 1b15c86 pushed by DJSiddharthVader
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small comments TOC Generator #19: Commit b226352 pushed by DJSiddharthVader
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Completery rework sampleID <-> metadata parsing logic TOC Generator #18: Commit 34eb2a4 pushed by DJSiddharthVader
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re-organize some data handling functions TOC Generator #17: Commit 7c0262c pushed by DJSiddharthVader
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add description of TAD data columns TOC Generator #16: Commit b83f05d pushed by DJSiddharthVader
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add wrapper for lineplots TOC Generator #15: Commit 5742efa pushed by DJSiddharthVader
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misc refactoring + compatability stuff TOC Generator #14: Commit 170b9fa pushed by DJSiddharthVader
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start using ggridges TOC Generator #13: Commit 6f6dde3 pushed by DJSiddharthVader
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Consolidating a bunch of miscelaneous notes, will tidy later TOC Generator #12: Commit 130ba43 pushed by DJSiddharthVader
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