Merging Master and HT condor integration by tluquez · Pull Request #3 · tluquez/QUARS

Commits on Sep 17, 2018

Fixing some typo error in README. Enhancing the help message. Adding a new multiqc_report_single.html.

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Adding html github preview to the example reports

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Adding html github preview to the example reports

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Adding html github preview to the example reports

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Adding timeline and execution reports for single end into Docs

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Updating README to include timeline and execution reports

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Commits on Sep 22, 2018

Adding logo

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Adding support for multiqc_config.yaml

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Fixing typos in README and nf.config

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Fixing the call to the multiqc config file

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Fixing the call to the multiqc config file

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Commits on Sep 25, 2018

Adding the multiqc_config.yaml as input for process multiqc.

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Defining multiqc_config.yaml as a file previous to input for process multiqc.

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Fixing some logging

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Fixing some logging

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Fixing the call to multiqc_config.yaml with -c instead of --cl_config

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Readding main script after accidental deletion

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Minor changes to put into work multiqc config file

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Setting up multqc config.

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Last try to solve the multiqc error

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Replacing single quotes to double ones.

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Correctly setting the working dir.

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Setting up the logo path.

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Replacing the logo url

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Replacing the logo url

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Replacing the name of the multiqc report.

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Replacing the logo url.

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Renaming output files

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Updating README links

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Another change to the logo url

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Commits on May 5, 2019

Fixing straight running message

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Commits on May 14, 2019

Fixing the help bu adding the number of cpus and calling QUARS instead of quars.nf

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Commits on Jan 31, 2020

Removing automatic deduplicate option in fastp
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Syncronising ISB machine
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Removing automatic deduplication in fastp to avoid unexpected library shrinking and information loss.
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